RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 UFSP1Q6NVU6 142 aa10.9□□□□□ -0.66
BRCA1-228ENST00000618469 SFRP2Q96HF1 295 aa10.9□□□□□ -0.66
BRCA1-228ENST00000618469 LY96Q9Y6Y9 160 aa10.9□□□□□ -0.66
BRCA1-228ENST00000618469 TRBV20OR9-2A0A075B6H5 130 aa10.89□□□□□ -0.67
BRCA1-228ENST00000618469 IGLV2-8P01709 118 aa10.89□□□□□ -0.67
BRCA1-228ENST00000618469 TIRAPP58753 221 aa10.89□□□□□ -0.67
BRCA1-228ENST00000618469 BLOC1S1P78537 153 aa10.89□□□□□ -0.67
BRCA1-228ENST00000618469 C14orf178Q8N769 122 aaPredicted RBP10.89□□□□□ -0.67
BRCA1-228ENST00000618469 OR10AG1Q8NH19 301 aa10.89□□□□□ -0.67
BRCA1-228ENST00000618469 GAGE12JA6NER3 117 aa10.88□□□□□ -0.67
BRCA1-228ENST00000618469 GAGE1Q13065 139 aa10.88□□□□□ -0.67
BRCA1-228ENST00000618469 GAGE4Q13068 117 aa10.88□□□□□ -0.67
BRCA1-228ENST00000618469 GAGE5Q13069 117 aa10.88□□□□□ -0.67
BRCA1-228ENST00000618469 GAGE13Q4V321 117 aa10.88□□□□□ -0.67
BRCA1-228ENST00000618469 DAZAP1Q96EP5 407 aaKnown RBP10.88□□□□□ -0.67
BRCA1-228ENST00000618469 SMIM12Q96EX1 92 aa10.88□□□□□ -0.67
BRCA1-228ENST00000618469 MUC21A0A0G2JKD1 596 aa10.87□□□□□ -0.67
BRCA1-228ENST00000618469 MUC21A0A140T8X8 626 aa10.87□□□□□ -0.67
BRCA1-228ENST00000618469 SNAI2O43623 268 aa10.87□□□□□ -0.67
BRCA1-228ENST00000618469 LINC00694P0DN24 101 aa10.87□□□□□ -0.67
BRCA1-228ENST00000618469 BTF3P20290 206 aaKnown RBP10.87□□□□□ -0.67
BRCA1-228ENST00000618469 OR10J3Q5JRS4 329 aa10.87□□□□□ -0.67
BRCA1-228ENST00000618469 ATP6V0E2Q8NHE4 81 aa10.87□□□□□ -0.67
BRCA1-228ENST00000618469 CRYGDP07320 174 aa10.86□□□□□ -0.67
BRCA1-228ENST00000618469 OR5AL1P0C617 328 aa10.86□□□□□ -0.67
BRCA1-228ENST00000618469 DNAH10OSP0CZ25 163 aa10.86□□□□□ -0.67
BRCA1-228ENST00000618469 EVI2AP22794 236 aa10.86□□□□□ -0.67
BRCA1-228ENST00000618469 SPANXN1Q5VSR9 72 aa10.86□□□□□ -0.67
BRCA1-228ENST00000618469 OR2D3Q8NGH3 330 aa10.86□□□□□ -0.67
BRCA1-228ENST00000618469 TRAV9-2A0A087WT02 112 aa10.85□□□□□ -0.67
BRCA1-228ENST00000618469 TRAV8-6A0A0B4J262 113 aa10.85□□□□□ -0.67
BRCA1-228ENST00000618469 C19orf71A6NCJ1 209 aa10.85□□□□□ -0.67
BRCA1-228ENST00000618469 P01737 135 aa10.85□□□□□ -0.67
BRCA1-228ENST00000618469 GZMBP10144 247 aa10.85□□□□□ -0.67
BRCA1-228ENST00000618469 SSTP61278 116 aa10.85□□□□□ -0.67
BRCA1-228ENST00000618469 LELP1Q5T871 98 aa10.85□□□□□ -0.67
BRCA1-228ENST00000618469 TPPP3Q9BW30 176 aa10.85□□□□□ -0.67
BRCA1-228ENST00000618469 GTSF1LQ9H1H1 148 aa10.85□□□□□ -0.67
BRCA1-228ENST00000618469 Q9UF83 564 aa10.85□□□□□ -0.67
BRCA1-228ENST00000618469 IGHV3-38A0A0C4DH36 116 aa10.84□□□□□ -0.67
BRCA1-228ENST00000618469 RBFOX3A6NFN3 312 aa10.84□□□□□ -0.67
BRCA1-228ENST00000618469 CDK2AP2O75956 126 aa10.84□□□□□ -0.67
BRCA1-228ENST00000618469 RPS20P60866 119 aaKnown RBP10.84□□□□□ -0.67
BRCA1-228ENST00000618469 ZNF56Q15929 161 aa10.84□□□□□ -0.67
BRCA1-228ENST00000618469 TOR2AQ5JU69 321 aa10.84□□□□□ -0.67
BRCA1-228ENST00000618469 LYPD6BQ8NI32 183 aa10.84□□□□□ -0.67
BRCA1-228ENST00000618469 SSBP4Q9BWG4 385 aaPredicted RBP10.84□□□□□ -0.67
BRCA1-228ENST00000618469 BIN3Q9NQY0 253 aa10.84□□□□□ -0.67
BRCA1-228ENST00000618469 HERC1Q15751 4861 aa10.83□□□□□ -0.68
BRCA1-228ENST00000618469 Q6ZRN7 208 aaPredicted RBP10.83□□□□□ -0.68
BRCA1-228ENST00000618469 C10orf126Q8N4M7 172 aa10.83□□□□□ -0.68
BRCA1-228ENST00000618469 FER1L6-AS1Q8NA97 138 aa10.83□□□□□ -0.68
BRCA1-228ENST00000618469 AP1S3Q96PC3 154 aa10.83□□□□□ -0.68
BRCA1-228ENST00000618469 MSRB1Q9NZV6 116 aa10.83□□□□□ -0.68
BRCA1-228ENST00000618469 TNFRSF18Q9Y5U5 241 aa10.83□□□□□ -0.68
BRCA1-228ENST00000618469 TMEM250H0YL14 139 aa10.82□□□□□ -0.68
BRCA1-228ENST00000618469 K7EP13 123 aa10.82□□□□□ -0.68
BRCA1-228ENST00000618469 IGLC6P0CF74 106 aa10.82□□□□□ -0.68
BRCA1-228ENST00000618469 CEBPGP53567 150 aa10.82□□□□□ -0.68
BRCA1-228ENST00000618469 LINC01556Q5JQF7 62 aa10.82□□□□□ -0.68
BRCA1-228ENST00000618469 Q8N1X5 172 aa10.82□□□□□ -0.68
BRCA1-228ENST00000618469 LRP1BQ9NZR2 4599 aa10.82□□□□□ -0.68
BRCA1-228ENST00000618469 TRBV10-1A0A0K0K1A3 114 aa10.81□□□□□ -0.68
BRCA1-228ENST00000618469 XKRY2A2RUG3 117 aa10.81□□□□□ -0.68
BRCA1-228ENST00000618469 IGHV3-30P01768 117 aa10.81□□□□□ -0.68
BRCA1-228ENST00000618469 IGHV3-33P01772 117 aa10.81□□□□□ -0.68
BRCA1-228ENST00000618469 IGHV3-30-3P0DP02 117 aa10.81□□□□□ -0.68
BRCA1-228ENST00000618469 IGHV3-30-5P0DP03 117 aa10.81□□□□□ -0.68
BRCA1-228ENST00000618469 NFE4Q86UQ8 179 aa10.81□□□□□ -0.68
BRCA1-228ENST00000618469 K7EN84 100 aa10.8□□□□□ -0.68
BRCA1-228ENST00000618469 SMIM17P0DL12 118 aa10.8□□□□□ -0.68
BRCA1-228ENST00000618469 RAB4BP61018 213 aa10.8□□□□□ -0.68
BRCA1-228ENST00000618469 RPL36AP83881 106 aaKnown RBP10.8□□□□□ -0.68
BRCA1-228ENST00000618469 RPL36ALQ969Q0 106 aaKnown RBP10.8□□□□□ -0.68
BRCA1-228ENST00000618469 EIF5A2Q9GZV4 153 aaKnown RBP10.8□□□□□ -0.68
BRCA1-228ENST00000618469 F5H697 171 aa10.79□□□□□ -0.68
BRCA1-228ENST00000618469 SPATA12Q7Z6I5 190 aa10.79□□□□□ -0.68
BRCA1-228ENST00000618469 NUDT10Q8NFP7 164 aa10.79□□□□□ -0.68
BRCA1-228ENST00000618469 OCC1Q8TAD7 63 aa10.79□□□□□ -0.68
BRCA1-228ENST00000618469 NUDT11Q96G61 164 aa10.79□□□□□ -0.68
BRCA1-228ENST00000618469 RNASE7Q9H1E1 156 aaKnown RBP10.79□□□□□ -0.68
BRCA1-228ENST00000618469 RPP21Q9H633 154 aaKnown RBP10.79□□□□□ -0.68
BRCA1-228ENST00000618469 A0A087WWC5 75 aa10.78□□□□□ -0.68
BRCA1-228ENST00000618469 MGPP08493 103 aa10.78□□□□□ -0.68
BRCA1-228ENST00000618469 ERVFC1-1P60608 527 aa10.78□□□□□ -0.68
BRCA1-228ENST00000618469 CACNG7P62955 275 aa10.78□□□□□ -0.68
BRCA1-228ENST00000618469 Q8N3U1 123 aa10.78□□□□□ -0.68
BRCA1-228ENST00000618469 FAM210AQ96ND0 272 aa10.78□□□□□ -0.68
BRCA1-228ENST00000618469 TRBV7-3A0A075B6L6 115 aa10.77□□□□□ -0.69
BRCA1-228ENST00000618469 CTRLP40313 264 aa10.77□□□□□ -0.69
BRCA1-228ENST00000618469 UBE2D3P61077 147 aa10.77□□□□□ -0.69
BRCA1-228ENST00000618469 UBE2D2P62837 147 aa10.77□□□□□ -0.69
BRCA1-228ENST00000618469 LYZL1Q6UWQ5 148 aa10.77□□□□□ -0.69
BRCA1-228ENST00000618469 NEXN-AS1Q8NBZ9 246 aa10.77□□□□□ -0.69
BRCA1-228ENST00000618469 OR10G8Q8NGN5 311 aa10.77□□□□□ -0.69
BRCA1-228ENST00000618469 Q9HAA7 133 aa10.77□□□□□ -0.69
BRCA1-228ENST00000618469 KIF25-AS1Q9Y6Z4 181 aa10.77□□□□□ -0.69
BRCA1-228ENST00000618469 APOBP04114 4563 aaKnown RBP10.76□□□□□ -0.69
BRCA1-228ENST00000618469 F2Z2F3 143 aa10.76□□□□□ -0.69
BRCA1-228ENST00000618469 SMIM7Q9BQ49 75 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms