RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 Q8N6K4 173 aa10.68□□□□□ -0.7
CIITA-213ENST00000618327 DEFB121Q5J5C9 76 aa10.68□□□□□ -0.7
CIITA-213ENST00000618327 PRAC2D3DTV9 90 aa10.67□□□□□ -0.7
CIITA-213ENST00000618327 H3BMG7 143 aa10.67□□□□□ -0.7
CIITA-213ENST00000618327 TRPT1Q86TN4 253 aaKnown RBP10.67□□□□□ -0.7
CIITA-213ENST00000618327 TP53TG1Q9Y2A0 90 aa10.67□□□□□ -0.7
CIITA-213ENST00000618327 AZU1P20160 251 aa10.66□□□□□ -0.7
CIITA-213ENST00000618327 Q8N8P6 123 aa10.66□□□□□ -0.7
CIITA-213ENST00000618327 FGF6P10767 208 aa10.66□□□□□ -0.7
CIITA-213ENST00000618327 C4orf3Q8WVX3 66 aa10.66□□□□□ -0.7
CIITA-213ENST00000618327 ABCA12Q86UK0 2595 aa10.66□□□□□ -0.7
CIITA-213ENST00000618327 SOCS3O14543 225 aa10.66□□□□□ -0.7
CIITA-213ENST00000618327 GNRH2O43555 120 aa10.66□□□□□ -0.7
CIITA-213ENST00000618327 PYGO2Q9BRQ0 406 aa10.66□□□□□ -0.7
CIITA-213ENST00000618327 CLPSL1A2RUU4 121 aa10.65□□□□□ -0.7
CIITA-213ENST00000618327 APRG1Q8IVJ8 170 aa10.65□□□□□ -0.7
CIITA-213ENST00000618327 IFITM1P13164 125 aa10.65□□□□□ -0.7
CIITA-213ENST00000618327 AMTNQ6UX39 209 aa10.65□□□□□ -0.7
CIITA-213ENST00000618327 BBC3Q96PG8 261 aaPredicted RBP10.65□□□□□ -0.7
CIITA-213ENST00000618327 MRPL35Q9NZE8 188 aaKnown RBP10.65□□□□□ -0.7
CIITA-213ENST00000618327 TRAV26-2A0A0B4J265 109 aa10.65□□□□□ -0.7
CIITA-213ENST00000618327 KRTAP10-9P60411 292 aa10.65□□□□□ -0.7
CIITA-213ENST00000618327 PMVKQ15126 192 aa10.65□□□□□ -0.7
CIITA-213ENST00000618327 CITED2Q99967 270 aaPredicted RBP10.65□□□□□ -0.7
CIITA-213ENST00000618327 PRO1854Q9UHT4 67 aa10.65□□□□□ -0.7
CIITA-213ENST00000618327 FASNP49327 2511 aaKnown RBP10.65□□□□□ -0.71
CIITA-213ENST00000618327 WIPF2Q8TF74 440 aaPredicted RBP10.64□□□□□ -0.71
CIITA-213ENST00000618327 CDPF1Q6NVV7 123 aa10.64□□□□□ -0.71
CIITA-213ENST00000618327 BPTFQ12830 3046 aa10.64□□□□□ -0.71
CIITA-213ENST00000618327 SIGLEC8Q9NYZ4 499 aa10.64□□□□□ -0.71
CIITA-213ENST00000618327 NACAE9PAV3 2078 aa10.64□□□□□ -0.71
CIITA-213ENST00000618327 TANC2Q9HCD6 1990 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 F8VRH5 84 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 C9orf47Q6ZRZ4 202 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 IGHV3-16A0A0C4DH30 117 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 GAGE12JA6NER3 117 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 GAGE7O76087 117 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 GAGE12FP0CL80 117 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 GAGE12GP0CL81 117 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 GAGE12IP0CL82 117 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 APOC4P55056 127 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 CFHR3Q02985 330 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 GAGE4Q13068 117 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 TAL2Q16559 108 aa10.63□□□□□ -0.71
CIITA-213ENST00000618327 COA6Q5JTJ3 125 aaKnown RBP10.63□□□□□ -0.71
CIITA-213ENST00000618327 NPYP01303 97 aa10.62□□□□□ -0.71
CIITA-213ENST00000618327 SPANXDQ9BXN6 97 aa10.62□□□□□ -0.71
CIITA-213ENST00000618327 UNC80Q8N2C7 3258 aa10.62□□□□□ -0.71
CIITA-213ENST00000618327 SDHAF1A6NFY7 115 aa10.62□□□□□ -0.71
CIITA-213ENST00000618327 Q6ZVH6 145 aa10.62□□□□□ -0.71
CIITA-213ENST00000618327 TMEM141Q96I45 108 aa10.62□□□□□ -0.71
CIITA-213ENST00000618327 KIR2DL5BA0A0G2JN68 375 aa10.62□□□□□ -0.71
CIITA-213ENST00000618327 KIR2DL5BA0A0G2JPC4 375 aa10.62□□□□□ -0.71
CIITA-213ENST00000618327 KIR2DL5AQ8N109 375 aa10.62□□□□□ -0.71
CIITA-213ENST00000618327 DOPEY1Q5JWR5 2465 aa10.62□□□□□ -0.71
CIITA-213ENST00000618327 CCL25O15444 150 aa10.61□□□□□ -0.71
CIITA-213ENST00000618327 AVPP01185 164 aa10.61□□□□□ -0.71
CIITA-213ENST00000618327 MYCNOSP40205 109 aa10.61□□□□□ -0.71
CIITA-213ENST00000618327 DEFB1P60022 68 aa10.61□□□□□ -0.71
CIITA-213ENST00000618327 C9orf66Q5T8R8 295 aa10.61□□□□□ -0.71
CIITA-213ENST00000618327 UBL5Q9BZL1 73 aa10.61□□□□□ -0.71
CIITA-213ENST00000618327 JMJD1CQ15652 2540 aa10.61□□□□□ -0.71
CIITA-213ENST00000618327 K7ERJ3 54 aa10.61□□□□□ -0.71
CIITA-213ENST00000618327 CEND1Q8N111 149 aa10.61□□□□□ -0.71
CIITA-213ENST00000618327 TRBV6-1A0A0K0K1D8 114 aa10.6□□□□□ -0.71
CIITA-213ENST00000618327 SIVA1O15304 175 aa10.6□□□□□ -0.71
CIITA-213ENST00000618327 TMEM61Q8N0U2 210 aa10.6□□□□□ -0.71
CIITA-213ENST00000618327 C2CD3Q4AC94 2353 aa10.6□□□□□ -0.71
CIITA-213ENST00000618327 SPRY2O43597 315 aa10.6□□□□□ -0.71
CIITA-213ENST00000618327 HLA-DRB4P13762 266 aa10.6□□□□□ -0.71
CIITA-213ENST00000618327 DEFB125Q8N687 156 aa10.6□□□□□ -0.71
CIITA-213ENST00000618327 NDUFA12Q9UI09 145 aa10.6□□□□□ -0.71
CIITA-213ENST00000618327 HLA-DRB4X5D2U9 266 aa10.6□□□□□ -0.71
CIITA-213ENST00000618327 TRAV25A0A0B4J276 109 aa10.59□□□□□ -0.71
CIITA-213ENST00000618327 SMIM2Q9BVW6 85 aa10.59□□□□□ -0.71
CIITA-213ENST00000618327 HAMPP81172 84 aa10.59□□□□□ -0.71
CIITA-213ENST00000618327 GAGE5Q13069 117 aa10.59□□□□□ -0.71
CIITA-213ENST00000618327 GTSF1Q8WW33 167 aa10.59□□□□□ -0.71
CIITA-213ENST00000618327 CDH23Q9H251 3354 aa10.59□□□□□ -0.71
CIITA-213ENST00000618327 RAI1Q7Z5J4 1906 aaPredicted RBP10.59□□□□□ -0.71
CIITA-213ENST00000618327 F8WEM9 126 aa10.59□□□□□ -0.71
CIITA-213ENST00000618327 DAD1P61803 113 aa10.59□□□□□ -0.71
CIITA-213ENST00000618327 ZFAND3Q9H8U3 227 aa10.59□□□□□ -0.71
CIITA-213ENST00000618327 B5MCH6 92 aa10.58□□□□□ -0.72
CIITA-213ENST00000618327 I3L3M4 83 aa10.58□□□□□ -0.72
CIITA-213ENST00000618327 SRSF2Q01130 221 aaKnown RBP10.58□□□□□ -0.72
CIITA-213ENST00000618327 C12orf74Q32Q52 190 aa10.58□□□□□ -0.72
CIITA-213ENST00000618327 Q6ZSV7 163 aa10.58□□□□□ -0.72
CIITA-213ENST00000618327 NTN5Q8WTR8 489 aaPredicted RBP10.58□□□□□ -0.72
CIITA-213ENST00000618327 C10orf99Q6UWK7 81 aa10.58□□□□□ -0.72
CIITA-213ENST00000618327 ZNF747Q9BV97 191 aa10.58□□□□□ -0.72
CIITA-213ENST00000618327 POLQO75417 2590 aa10.58□□□□□ -0.72
CIITA-213ENST00000618327 SS18Q15532 418 aa10.58□□□□□ -0.72
CIITA-213ENST00000618327 SETD2Q9BYW2 2564 aaPredicted RBP10.58□□□□□ -0.72
CIITA-213ENST00000618327 INAFM1C9JVW0 142 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 CARD19Q96LW7 228 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 MSRB1Q9NZV6 116 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 DKK2Q9UBU2 259 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 GAGE6Q13070 117 aa10.57□□□□□ -0.72
CIITA-213ENST00000618327 J3QQQ9 107 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms