RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ZFP82Q8N141 532 aa9.25□□□□□ -0.93
LINC00540-202ENST00000616974 DNAH5Q8TE73 4624 aa9.25□□□□□ -0.93
LINC00540-202ENST00000616974 A8MWV9 139 aa9.25□□□□□ -0.93
LINC00540-202ENST00000616974 LINC00315P59091 139 aa9.25□□□□□ -0.93
LINC00540-202ENST00000616974 SPANXN1Q5VSR9 72 aa9.25□□□□□ -0.93
LINC00540-202ENST00000616974 Q8N3U1 123 aa9.25□□□□□ -0.93
LINC00540-202ENST00000616974 KIF25-AS1Q9Y6Z4 181 aa9.25□□□□□ -0.93
LINC00540-202ENST00000616974 BIRC6Q9NR09 4857 aa9.24□□□□□ -0.93
LINC00540-202ENST00000616974 GAGE12JA6NER3 117 aa9.24□□□□□ -0.93
LINC00540-202ENST00000616974 CXCL1P09341 107 aa9.24□□□□□ -0.93
LINC00540-202ENST00000616974 ERVFC1-1P60608 527 aa9.24□□□□□ -0.93
LINC00540-202ENST00000616974 GAGE1Q13065 139 aa9.24□□□□□ -0.93
LINC00540-202ENST00000616974 GAGE4Q13068 117 aa9.24□□□□□ -0.93
LINC00540-202ENST00000616974 GAGE5Q13069 117 aa9.24□□□□□ -0.93
LINC00540-202ENST00000616974 RNF212Q495C1 297 aa9.24□□□□□ -0.93
LINC00540-202ENST00000616974 GAGE13Q4V321 117 aa9.24□□□□□ -0.93
LINC00540-202ENST00000616974 WFDC10BQ8IUB3 73 aa9.24□□□□□ -0.93
LINC00540-202ENST00000616974 MED14OSP0DP75 135 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 EVI2AP22794 236 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 CCL18P55774 89 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 Q6ZR54 194 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 SYT8Q8NBV8 401 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 TRBV6-4A0A1B0GX49 114 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 NTF3P20783 257 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 SRIP30626 198 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 ADIRFQ15847 76 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 MRPL23Q16540 153 aaKnown RBP9.23□□□□□ -0.93
LINC00540-202ENST00000616974 CLLU1Q5K131 121 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 ISOC2Q96AB3 205 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 Q9H8V8 135 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 TNFRSF18Q9Y5U5 241 aa9.23□□□□□ -0.93
LINC00540-202ENST00000616974 PEA15Q15121 130 aa9.22□□□□□ -0.93
LINC00540-202ENST00000616974 ZFP2Q6ZN57 461 aa9.22□□□□□ -0.93
LINC00540-202ENST00000616974 NEGR1Q7Z3B1 354 aa9.22□□□□□ -0.93
LINC00540-202ENST00000616974 DEFB104AQ8WTQ1 72 aa9.22□□□□□ -0.93
LINC00540-202ENST00000616974 V9GYV3 84 aa9.22□□□□□ -0.93
LINC00540-202ENST00000616974 GATCO43716 136 aaKnown RBP9.22□□□□□ -0.93
LINC00540-202ENST00000616974 LINC00694P0DN24 101 aa9.22□□□□□ -0.93
LINC00540-202ENST00000616974 SLAQ13239 276 aa9.22□□□□□ -0.93
LINC00540-202ENST00000616974 RHOHQ15669 191 aa9.22□□□□□ -0.93
LINC00540-202ENST00000616974 PIK3CD-AS1Q5SR53 167 aa9.22□□□□□ -0.93
LINC00540-202ENST00000616974 FAM231DQ6ZW35 169 aa9.22□□□□□ -0.93
LINC00540-202ENST00000616974 PGLYRP4Q96LB8 373 aa9.22□□□□□ -0.93
LINC00540-202ENST00000616974 RTL8CO15255 209 aa9.21□□□□□ -0.94
LINC00540-202ENST00000616974 ADCYAP1P18509 176 aa9.21□□□□□ -0.94
LINC00540-202ENST00000616974 CTRLP40313 264 aa9.21□□□□□ -0.94
LINC00540-202ENST00000616974 ZNF56Q15929 161 aa9.21□□□□□ -0.94
LINC00540-202ENST00000616974 TMEM241Q24JQ0 296 aa9.21□□□□□ -0.94
LINC00540-202ENST00000616974 MRPS16Q9Y3D3 137 aaKnown RBP9.21□□□□□ -0.94
LINC00540-202ENST00000616974 LY96Q9Y6Y9 160 aa9.21□□□□□ -0.94
LINC00540-202ENST00000616974 DYNC1H1Q14204 4646 aaKnown RBP9.21□□□□□ -0.94
LINC00540-202ENST00000616974 SOHLH1Q5JUK2 328 aa9.2□□□□□ -0.94
LINC00540-202ENST00000616974 RAB14P61106 215 aa9.2□□□□□ -0.94
LINC00540-202ENST00000616974 KIAA1109Q2LD37 5005 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 TRAV26-2A0A0B4J265 109 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 IGHV3-38A0A0C4DH36 116 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 NBDYA0A0U1RRE5 68 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 NDUFS6O75380 124 aaKnown RBP9.19□□□□□ -0.94
LINC00540-202ENST00000616974 GAS8-AS1O95177 125 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 RPS20P60866 119 aaKnown RBP9.19□□□□□ -0.94
LINC00540-202ENST00000616974 NAT8Q9UHE5 227 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 HIGD1CA8MV81 97 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 MGPP08493 103 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 NEXN-AS1Q8NBZ9 246 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 PRADC1Q9BSG0 188 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 UPK3BQ9BT76 320 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 BIN3Q9NQY0 253 aa9.19□□□□□ -0.94
LINC00540-202ENST00000616974 TWIST1Q15672 202 aa9.18□□□□□ -0.94
LINC00540-202ENST00000616974 CNFNQ9BYD5 112 aa9.18□□□□□ -0.94
LINC00540-202ENST00000616974 OSTCQ9NRP0 149 aa9.18□□□□□ -0.94
LINC00540-202ENST00000616974 LRP1BQ9NZR2 4599 aa9.17□□□□□ -0.94
LINC00540-202ENST00000616974 F5H697 171 aa9.17□□□□□ -0.94
LINC00540-202ENST00000616974 RHODO00212 210 aa9.17□□□□□ -0.94
LINC00540-202ENST00000616974 SUMO4Q6EEV6 95 aa9.17□□□□□ -0.94
LINC00540-202ENST00000616974 ATP6V0E2Q8NHE4 81 aa9.17□□□□□ -0.94
LINC00540-202ENST00000616974 AP1S3Q96PC3 154 aa9.17□□□□□ -0.94
LINC00540-202ENST00000616974 A0A1W2PPQ1 181 aa9.16□□□□□ -0.94
LINC00540-202ENST00000616974 XKRY2A2RUG3 117 aa9.16□□□□□ -0.94
LINC00540-202ENST00000616974 SIVA1O15304 175 aa9.16□□□□□ -0.94
LINC00540-202ENST00000616974 NUP35Q8NFH5 326 aa9.16□□□□□ -0.94
LINC00540-202ENST00000616974 TSKUQ8WUA8 353 aa9.16□□□□□ -0.94
LINC00540-202ENST00000616974 A8MWL6 223 aa9.16□□□□□ -0.94
LINC00540-202ENST00000616974 F2Z2F3 143 aa9.16□□□□□ -0.94
LINC00540-202ENST00000616974 FAM74A3Q4VXF1 159 aa9.16□□□□□ -0.94
LINC00540-202ENST00000616974 DNAJC30Q96LL9 226 aa9.16□□□□□ -0.94
LINC00540-202ENST00000616974 SMDT1Q9H4I9 107 aa9.16□□□□□ -0.94
LINC00540-202ENST00000616974 M0QY20 66 aa9.15□□□□□ -0.94
LINC00540-202ENST00000616974 UBE2D3P61077 147 aa9.15□□□□□ -0.94
LINC00540-202ENST00000616974 UBE2D2P62837 147 aa9.15□□□□□ -0.94
LINC00540-202ENST00000616974 CT83Q5H943 113 aa9.15□□□□□ -0.94
LINC00540-202ENST00000616974 OR10G8Q8NGN5 311 aa9.15□□□□□ -0.94
LINC00540-202ENST00000616974 GTSF1LQ9H1H1 148 aa9.15□□□□□ -0.94
LINC00540-202ENST00000616974 CIDEAO60543 219 aa9.14□□□□□ -0.95
LINC00540-202ENST00000616974 RAB4BP61018 213 aa9.14□□□□□ -0.95
LINC00540-202ENST00000616974 CACNG7P62955 275 aa9.14□□□□□ -0.95
LINC00540-202ENST00000616974 COMMD7Q86VX2 200 aa9.14□□□□□ -0.95
LINC00540-202ENST00000616974 RPL39LQ96EH5 51 aaKnown RBP9.14□□□□□ -0.95
LINC00540-202ENST00000616974 IGHV3-30P01768 117 aa9.13□□□□□ -0.95
LINC00540-202ENST00000616974 IGHV3-33P01772 117 aa9.13□□□□□ -0.95
LINC00540-202ENST00000616974 IGHV3-30-3P0DP02 117 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms