RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 LINC01559Q495D7 138 aa12.93□□□□□ -0.34
CDX1-202ENST00000616154 ADIRFQ15847 76 aa12.92□□□□□ -0.34
CDX1-202ENST00000616154 PRR27Q6MZM9 219 aa12.92□□□□□ -0.34
CDX1-202ENST00000616154 NUDT10Q8NFP7 164 aa12.92□□□□□ -0.34
CDX1-202ENST00000616154 NUDT11Q96G61 164 aa12.92□□□□□ -0.34
CDX1-202ENST00000616154 ZNF479Q96JC4 524 aa12.92□□□□□ -0.34
CDX1-202ENST00000616154 OSTCQ9NRP0 149 aa12.92□□□□□ -0.34
CDX1-202ENST00000616154 IGKV3D-20A0A0C4DH25 116 aa12.91□□□□□ -0.34
CDX1-202ENST00000616154 LYPD5Q6UWN5 251 aa12.91□□□□□ -0.34
CDX1-202ENST00000616154 PTH2Q96A98 100 aa12.91□□□□□ -0.34
CDX1-202ENST00000616154 C9orf85Q96MD7 179 aa12.91□□□□□ -0.34
CDX1-202ENST00000616154 CXCL1P09341 107 aa12.9□□□□□ -0.34
CDX1-202ENST00000616154 ERVFC1-1P60608 527 aa12.9□□□□□ -0.34
CDX1-202ENST00000616154 MRPL23Q16540 153 aaKnown RBP12.9□□□□□ -0.34
CDX1-202ENST00000616154 DNLZQ5SXM8 178 aa12.9□□□□□ -0.34
CDX1-202ENST00000616154 SFRP2Q96HF1 295 aa12.9□□□□□ -0.34
CDX1-202ENST00000616154 RNASE7Q9H1E1 156 aaKnown RBP12.9□□□□□ -0.34
CDX1-202ENST00000616154 PGPEP1Q9NXJ5 209 aa12.9□□□□□ -0.34
CDX1-202ENST00000616154 B4DEV8 164 aa12.89□□□□□ -0.35
CDX1-202ENST00000616154 EREGO14944 169 aa12.89□□□□□ -0.35
CDX1-202ENST00000616154 CT83Q5H943 113 aa12.89□□□□□ -0.35
CDX1-202ENST00000616154 CDPF1Q6NVV7 123 aa12.89□□□□□ -0.35
CDX1-202ENST00000616154 TRGV4A0A0C4DH28 118 aa12.88□□□□□ -0.35
CDX1-202ENST00000616154 P01737 135 aa12.88□□□□□ -0.35
CDX1-202ENST00000616154 NEGR1Q7Z3B1 354 aa12.88□□□□□ -0.35
CDX1-202ENST00000616154 NFE4Q86UQ8 179 aa12.88□□□□□ -0.35
CDX1-202ENST00000616154 DAZAP1Q96EP5 407 aaKnown RBP12.88□□□□□ -0.35
CDX1-202ENST00000616154 V9GYV3 84 aa12.88□□□□□ -0.35
CDX1-202ENST00000616154 CIDEAO60543 219 aa12.88□□□□□ -0.35
CDX1-202ENST00000616154 ORM1P02763 201 aa12.88□□□□□ -0.35
CDX1-202ENST00000616154 RNASE3P12724 160 aaKnown RBP12.88□□□□□ -0.35
CDX1-202ENST00000616154 OR4C5Q8NGB2 326 aa12.88□□□□□ -0.35
CDX1-202ENST00000616154 RPP21Q9H633 154 aaKnown RBP12.88□□□□□ -0.35
CDX1-202ENST00000616154 TNFRSF18Q9Y5U5 241 aa12.88□□□□□ -0.35
CDX1-202ENST00000616154 K7EQD1 137 aa12.87□□□□□ -0.35
CDX1-202ENST00000616154 APOC3P02656 99 aa12.87□□□□□ -0.35
CDX1-202ENST00000616154 RPL19P84098 196 aaKnown RBP12.87□□□□□ -0.35
CDX1-202ENST00000616154 PIK3CD-AS1Q5SR53 167 aa12.87□□□□□ -0.35
CDX1-202ENST00000616154 SVBPQ8N300 66 aa12.87□□□□□ -0.35
CDX1-202ENST00000616154 C15orf54Q8N8G6 183 aa12.87□□□□□ -0.35
CDX1-202ENST00000616154 CLRN3Q8NCR9 226 aa12.87□□□□□ -0.35
CDX1-202ENST00000616154 OR10G8Q8NGN5 311 aa12.87□□□□□ -0.35
CDX1-202ENST00000616154 TRAV9-2A0A087WT02 112 aa12.86□□□□□ -0.35
CDX1-202ENST00000616154 EPM2AB3EWF7 344 aa12.86□□□□□ -0.35
CDX1-202ENST00000616154 K7EP13 123 aa12.86□□□□□ -0.35
CDX1-202ENST00000616154 M0R036 132 aa12.86□□□□□ -0.35
CDX1-202ENST00000616154 GATCO43716 136 aaKnown RBP12.86□□□□□ -0.35
CDX1-202ENST00000616154 GATA1P15976 413 aaPredicted RBP12.86□□□□□ -0.35
CDX1-202ENST00000616154 SRIP30626 198 aa12.86□□□□□ -0.35
CDX1-202ENST00000616154 RPS20P60866 119 aaKnown RBP12.86□□□□□ -0.35
CDX1-202ENST00000616154 ZNF876PQ49A33 203 aa12.86□□□□□ -0.35
CDX1-202ENST00000616154 OR2D3Q8NGH3 330 aa12.86□□□□□ -0.35
CDX1-202ENST00000616154 A0A087WWC5 75 aa12.85□□□□□ -0.35
CDX1-202ENST00000616154 PPP1R2P9O14990 202 aa12.85□□□□□ -0.35
CDX1-202ENST00000616154 RS1O15537 224 aa12.85□□□□□ -0.35
CDX1-202ENST00000616154 MT-ND4LP03901 98 aa12.85□□□□□ -0.35
CDX1-202ENST00000616154 FUSP35637 526 aaKnown RBP eCLIP12.85□□□□□ -0.35
CDX1-202ENST00000616154 RHEBQ15382 184 aa12.85□□□□□ -0.35
CDX1-202ENST00000616154 ANAPC16Q96DE5 110 aa12.85□□□□□ -0.35
CDX1-202ENST00000616154 A0A087WTM6 91 aa12.84□□□□□ -0.35
CDX1-202ENST00000616154 FAM231BA6NCW3 169 aa12.84□□□□□ -0.35
CDX1-202ENST00000616154 SNAPINO95295 136 aa12.84□□□□□ -0.35
CDX1-202ENST00000616154 IGLC6P0CF74 106 aa12.84□□□□□ -0.35
CDX1-202ENST00000616154 GYPEP15421 78 aa12.84□□□□□ -0.35
CDX1-202ENST00000616154 CFAP126Q5VTH2 177 aa12.84□□□□□ -0.35
CDX1-202ENST00000616154 SSBP4Q9BWG4 385 aaPredicted RBP12.84□□□□□ -0.35
CDX1-202ENST00000616154 FAT1Q14517 4588 aa12.83□□□□□ -0.35
CDX1-202ENST00000616154 XKRY2A2RUG3 117 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 C7orf77A4D0Y5 90 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 A8MWL6 223 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 ATP6V1G1O75348 118 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 DNAH10OSP0CZ25 163 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 FOXA3P55318 350 aaPredicted RBP12.83□□□□□ -0.36
CDX1-202ENST00000616154 TIRAPP58753 221 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 WFDC10BQ8IUB3 73 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 TSKUQ8WUA8 353 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 CTDSP1Q9GZU7 261 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 GFRA4Q9GZZ7 299 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 TMEM242Q9NWH2 141 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 IL36BQ9NZH7 164 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 MSRB1Q9NZV6 116 aa12.83□□□□□ -0.36
CDX1-202ENST00000616154 HERC1Q15751 4861 aa12.82□□□□□ -0.36
CDX1-202ENST00000616154 VPS13BQ7Z7G8 4022 aa12.82□□□□□ -0.36
CDX1-202ENST00000616154 XGP55808 180 aa12.82□□□□□ -0.36
CDX1-202ENST00000616154 SH2D6Q7Z4S9 175 aa12.82□□□□□ -0.36
CDX1-202ENST00000616154 TMSB15BA0A087X1C1 80 aa12.81□□□□□ -0.36
CDX1-202ENST00000616154 TRBV6-4A0A1B0GX49 114 aa12.81□□□□□ -0.36
CDX1-202ENST00000616154 SMIM27A0A1W2PRY6 76 aa12.81□□□□□ -0.36
CDX1-202ENST00000616154 SNAI2O43623 268 aa12.81□□□□□ -0.36
CDX1-202ENST00000616154 OR5AL1P0C617 328 aa12.81□□□□□ -0.36
CDX1-202ENST00000616154 EVI2AP22794 236 aa12.81□□□□□ -0.36
CDX1-202ENST00000616154 ASIPP42127 132 aa12.81□□□□□ -0.36
CDX1-202ENST00000616154 GTSF1Q8WW33 167 aa12.81□□□□□ -0.36
CDX1-202ENST00000616154 DMBT1Q9UGM3 2413 aaPredicted RBP12.81□□□□□ -0.36
CDX1-202ENST00000616154 GRIFINA4D1Z8 144 aa12.8□□□□□ -0.36
CDX1-202ENST00000616154 GZMBP10144 247 aa12.8□□□□□ -0.36
CDX1-202ENST00000616154 CTRLP40313 264 aa12.8□□□□□ -0.36
CDX1-202ENST00000616154 SLC25A29Q8N8R3 303 aa12.8□□□□□ -0.36
CDX1-202ENST00000616154 ARMS2P0C7Q2 107 aa12.79□□□□□ -0.36
CDX1-202ENST00000616154 S100A1P23297 94 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms