RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 C16orf74Q96GX8 76 aa10.26□□□□□ -0.77
USP39-220ENST00000613444 HOXA5P20719 270 aa10.25□□□□□ -0.77
USP39-220ENST00000613444 IQCJQ1A5X6 159 aa10.25□□□□□ -0.77
USP39-220ENST00000613444 RRN3P1Q2M238 152 aa10.25□□□□□ -0.77
USP39-220ENST00000613444 KPRPQ5T749 579 aaPredicted RBP10.25□□□□□ -0.77
USP39-220ENST00000613444 ORMDL3Q8N138 153 aa10.25□□□□□ -0.77
USP39-220ENST00000613444 RASL10AQ92737 203 aa10.25□□□□□ -0.77
USP39-220ENST00000613444 A0A087WWL8 130 aa10.25□□□□□ -0.77
USP39-220ENST00000613444 NUPR1O60356 82 aa10.25□□□□□ -0.77
USP39-220ENST00000613444 NCR2O95944 276 aa10.25□□□□□ -0.77
USP39-220ENST00000613444 CKS2P33552 79 aa10.25□□□□□ -0.77
USP39-220ENST00000613444 DEFB135Q30KP9 77 aa10.25□□□□□ -0.77
USP39-220ENST00000613444 TRAV26-2A0A0B4J265 109 aa10.24□□□□□ -0.77
USP39-220ENST00000613444 UBE2CO00762 179 aa10.24□□□□□ -0.77
USP39-220ENST00000613444 GATA1P15976 413 aaPredicted RBP10.24□□□□□ -0.77
USP39-220ENST00000613444 DAZ2Q13117 558 aaKnown RBP10.24□□□□□ -0.77
USP39-220ENST00000613444 MRPL16Q9NX20 251 aaKnown RBP10.24□□□□□ -0.77
USP39-220ENST00000613444 PPBPP02775 128 aa10.24□□□□□ -0.77
USP39-220ENST00000613444 UFSP1Q6NVU6 142 aa10.24□□□□□ -0.77
USP39-220ENST00000613444 PRELID3AQ96N28 172 aa10.24□□□□□ -0.77
USP39-220ENST00000613444 IFITM10A6NMD0 228 aa10.23□□□□□ -0.77
USP39-220ENST00000613444 NPYP01303 97 aa10.23□□□□□ -0.77
USP39-220ENST00000613444 Q6ZWC4 215 aa10.23□□□□□ -0.77
USP39-220ENST00000613444 NRACQ8N912 160 aa10.23□□□□□ -0.77
USP39-220ENST00000613444 URB1-AS1Q96HZ7 61 aa10.23□□□□□ -0.77
USP39-220ENST00000613444 OVOL2Q9BRP0 275 aa10.23□□□□□ -0.77
USP39-220ENST00000613444 SMIM9A6NGZ8 99 aa10.22□□□□□ -0.77
USP39-220ENST00000613444 HIST3H2BBQ8N257 126 aa10.22□□□□□ -0.77
USP39-220ENST00000613444 MRAP2Q96G30 205 aa10.22□□□□□ -0.77
USP39-220ENST00000613444 NDUFAF3Q9BU61 184 aa10.22□□□□□ -0.77
USP39-220ENST00000613444 NOP10Q9NPE3 64 aaKnown RBP10.22□□□□□ -0.77
USP39-220ENST00000613444 SERF1AO75920 110 aa10.22□□□□□ -0.77
USP39-220ENST00000613444 SMIM17P0DL12 118 aa10.22□□□□□ -0.77
USP39-220ENST00000613444 LGALS9BQ3B8N2 356 aa10.22□□□□□ -0.77
USP39-220ENST00000613444 CFAP126Q5VTH2 177 aa10.22□□□□□ -0.77
USP39-220ENST00000613444 Q6ZTI0 123 aa10.22□□□□□ -0.77
USP39-220ENST00000613444 BAGE3Q86Y29 109 aa10.22□□□□□ -0.77
USP39-220ENST00000613444 RNF183Q96D59 192 aa10.22□□□□□ -0.77
USP39-220ENST00000613444 A8MWV9 139 aa10.21□□□□□ -0.77
USP39-220ENST00000613444 MGPP08493 103 aa10.21□□□□□ -0.77
USP39-220ENST00000613444 ESDP10768 282 aa10.21□□□□□ -0.77
USP39-220ENST00000613444 FAM74A4Q5TZK3 123 aa10.21□□□□□ -0.77
USP39-220ENST00000613444 TNFRSF6BO95407 300 aa10.21□□□□□ -0.78
USP39-220ENST00000613444 LAMTOR2Q9Y2Q5 125 aa10.21□□□□□ -0.78
USP39-220ENST00000613444 TRGV1A0A0A0MS02 117 aa10.2□□□□□ -0.78
USP39-220ENST00000613444 RS1O15537 224 aa10.2□□□□□ -0.78
USP39-220ENST00000613444 PRB2P02812 416 aaPredicted RBP10.2□□□□□ -0.78
USP39-220ENST00000613444 KRTAP21-3Q3LHN1 58 aa10.2□□□□□ -0.78
USP39-220ENST00000613444 PDZD11Q5EBL8 140 aa10.2□□□□□ -0.78
USP39-220ENST00000613444 SUMO4Q6EEV6 95 aa10.2□□□□□ -0.78
USP39-220ENST00000613444 OR11H2Q8NH07 326 aa10.2□□□□□ -0.78
USP39-220ENST00000613444 NIT1Q86X76 327 aa10.19□□□□□ -0.78
USP39-220ENST00000613444 K7EIL1 84 aa10.19□□□□□ -0.78
USP39-220ENST00000613444 PRSS47A8MTI9 375 aa10.18□□□□□ -0.78
USP39-220ENST00000613444 M0QY20 66 aa10.18□□□□□ -0.78
USP39-220ENST00000613444 Q8NAQ8 132 aa10.18□□□□□ -0.78
USP39-220ENST00000613444 RPL39LQ96EH5 51 aaKnown RBP10.18□□□□□ -0.78
USP39-220ENST00000613444 IFI27P40305 119 aaPredicted RBP10.18□□□□□ -0.78
USP39-220ENST00000613444 LINC00612Q8N6U2 182 aa10.18□□□□□ -0.78
USP39-220ENST00000613444 IGHV3-73A0A0B4J1V6 119 aa10.17□□□□□ -0.78
USP39-220ENST00000613444 LOC389332A0A1B0GUA5 103 aa10.17□□□□□ -0.78
USP39-220ENST00000613444 F5H697 171 aa10.17□□□□□ -0.78
USP39-220ENST00000613444 EMP1P54849 157 aa10.17□□□□□ -0.78
USP39-220ENST00000613444 ZNF56Q15929 161 aa10.17□□□□□ -0.78
USP39-220ENST00000613444 Q6ZSN1 163 aa10.17□□□□□ -0.78
USP39-220ENST00000613444 HIST1H2BLQ99880 126 aa10.17□□□□□ -0.78
USP39-220ENST00000613444 EDA2RQ9HAV5 297 aa10.17□□□□□ -0.78
USP39-220ENST00000613444 TENM3Q9P273 2699 aa10.17□□□□□ -0.78
USP39-220ENST00000613444 IGLV2-18A0A075B6J9 118 aa10.16□□□□□ -0.78
USP39-220ENST00000613444 IGHV4-28A0A0C4DH34 117 aa10.16□□□□□ -0.78
USP39-220ENST00000613444 LINC00614P0C842 121 aa10.16□□□□□ -0.78
USP39-220ENST00000613444 MIFP14174 115 aa10.16□□□□□ -0.78
USP39-220ENST00000613444 ZFP2Q6ZN57 461 aa10.16□□□□□ -0.78
USP39-220ENST00000613444 ZNF479Q96JC4 524 aa10.16□□□□□ -0.78
USP39-220ENST00000613444 TP53TG1Q9Y2A0 90 aa10.16□□□□□ -0.78
USP39-220ENST00000613444 TRAV4A0A0B4J268 109 aa10.16□□□□□ -0.78
USP39-220ENST00000613444 RHODO00212 210 aa10.16□□□□□ -0.78
USP39-220ENST00000613444 MAP1LC3AQ9H492 121 aa10.16□□□□□ -0.78
USP39-220ENST00000613444 GAGE12BA1L429 117 aa10.15□□□□□ -0.78
USP39-220ENST00000613444 GAGE7O76087 117 aa10.15□□□□□ -0.78
USP39-220ENST00000613444 GAGE12FP0CL80 117 aa10.15□□□□□ -0.78
USP39-220ENST00000613444 GAGE12GP0CL81 117 aa10.15□□□□□ -0.78
USP39-220ENST00000613444 GAGE12IP0CL82 117 aa10.15□□□□□ -0.78
USP39-220ENST00000613444 RNASEKQ6P5S7 137 aaKnown RBP10.15□□□□□ -0.78
USP39-220ENST00000613444 OR4C5Q8NGB2 326 aa10.15□□□□□ -0.78
USP39-220ENST00000613444 CHCHD1Q96BP2 118 aaKnown RBP10.15□□□□□ -0.78
USP39-220ENST00000613444 LINC01546A6NGU7 62 aa10.15□□□□□ -0.79
USP39-220ENST00000613444 PRSS3P2Q8NHM4 247 aa10.15□□□□□ -0.79
USP39-220ENST00000613444 C20orf78Q9BR46 151 aa10.15□□□□□ -0.79
USP39-220ENST00000613444 RETNQ9HD89 108 aa10.15□□□□□ -0.79
USP39-220ENST00000613444 HUWE1Q7Z6Z7 4374 aaKnown RBP10.14□□□□□ -0.79
USP39-220ENST00000613444 DEFB4AO15263 64 aa10.14□□□□□ -0.79
USP39-220ENST00000613444 IGHV3-53P01767 116 aa10.14□□□□□ -0.79
USP39-220ENST00000613444 SUMO2P61956 95 aaKnown RBP10.14□□□□□ -0.79
USP39-220ENST00000613444 C18orf15Q96N68 181 aa10.14□□□□□ -0.79
USP39-220ENST00000613444 TRBV6-5A0A0K0K1A5 114 aa10.14□□□□□ -0.79
USP39-220ENST00000613444 PPP1R17O96001 155 aa10.14□□□□□ -0.79
USP39-220ENST00000613444 FABP4P15090 132 aa10.14□□□□□ -0.79
USP39-220ENST00000613444 S100A2P29034 98 aa10.14□□□□□ -0.79
USP39-220ENST00000613444 FAM19A2Q8N3H0 131 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 149.4 ms