RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 Q6ZTC4 211 aa10.15□□□□□ -0.78
UPF1-211ENST00000600868 SMCO4Q9NRQ5 59 aa10.15□□□□□ -0.78
UPF1-211ENST00000600868 URGCP-MRPS24S4R325 110 aa10.15□□□□□ -0.78
UPF1-211ENST00000600868 RHODO00212 210 aa10.14□□□□□ -0.79
UPF1-211ENST00000600868 MRPL54Q6P161 138 aaKnown RBP10.14□□□□□ -0.79
UPF1-211ENST00000600868 SMIM15Q7Z3B0 74 aa10.14□□□□□ -0.79
UPF1-211ENST00000600868 C14orf178Q8N769 122 aaPredicted RBP10.14□□□□□ -0.79
UPF1-211ENST00000600868 ZNF479Q96JC4 524 aa10.14□□□□□ -0.79
UPF1-211ENST00000600868 SAMD10Q9BYL1 202 aa10.14□□□□□ -0.79
UPF1-211ENST00000600868 KIF25-AS1Q9Y6Z4 181 aa10.14□□□□□ -0.79
UPF1-211ENST00000600868 NACAE9PAV3 2078 aa10.13□□□□□ -0.79
UPF1-211ENST00000600868 TGP01266 2768 aa10.13□□□□□ -0.79
UPF1-211ENST00000600868 A0A087WWL8 130 aa10.13□□□□□ -0.79
UPF1-211ENST00000600868 IGHV3-53P01767 116 aa10.13□□□□□ -0.79
UPF1-211ENST00000600868 S100A8P05109 93 aa10.13□□□□□ -0.79
UPF1-211ENST00000600868 SMIM17P0DL12 118 aa10.13□□□□□ -0.79
UPF1-211ENST00000600868 EVI2AP22794 236 aa10.13□□□□□ -0.79
UPF1-211ENST00000600868 HBBP68871 147 aa10.13□□□□□ -0.79
UPF1-211ENST00000600868 ELOBQ15370 118 aa10.13□□□□□ -0.79
UPF1-211ENST00000600868 RASL11AQ6T310 242 aa10.13□□□□□ -0.79
UPF1-211ENST00000600868 TMEM191AQ9H0A3 160 aa10.13□□□□□ -0.79
UPF1-211ENST00000600868 TRAV10A0A0B4J240 114 aa10.12□□□□□ -0.79
UPF1-211ENST00000600868 FHL2Q14192 279 aa10.12□□□□□ -0.79
UPF1-211ENST00000600868 FAM74A4Q5TZK3 123 aa10.12□□□□□ -0.79
UPF1-211ENST00000600868 TMEM88Q6PEY1 159 aa10.12□□□□□ -0.79
UPF1-211ENST00000600868 GATD1Q8NB37 220 aa10.12□□□□□ -0.79
UPF1-211ENST00000600868 DPH3P1Q9H4G8 78 aa10.12□□□□□ -0.79
UPF1-211ENST00000600868 TRBV24-1A0A075B6N3 115 aa10.11□□□□□ -0.79
UPF1-211ENST00000600868 TRGV4A0A0C4DH28 118 aa10.11□□□□□ -0.79
UPF1-211ENST00000600868 HOXA5P20719 270 aa10.11□□□□□ -0.79
UPF1-211ENST00000600868 CAMPP49913 170 aa10.11□□□□□ -0.79
UPF1-211ENST00000600868 LINC00315P59091 139 aa10.11□□□□□ -0.79
UPF1-211ENST00000600868 SLAQ13239 276 aa10.11□□□□□ -0.79
UPF1-211ENST00000600868 CBLN2Q8IUK8 224 aa10.11□□□□□ -0.79
UPF1-211ENST00000600868 YPEL4Q96NS1 127 aa10.11□□□□□ -0.79
UPF1-211ENST00000600868 DEFB131BA0A096LNP1 70 aa10.1□□□□□ -0.79
UPF1-211ENST00000600868 IGHV3-73A0A0B4J1V6 119 aa10.1□□□□□ -0.79
UPF1-211ENST00000600868 F5H768 121 aa10.1□□□□□ -0.79
UPF1-211ENST00000600868 HTN3P15516 51 aa10.1□□□□□ -0.79
UPF1-211ENST00000600868 GATA1P15976 413 aaPredicted RBP10.1□□□□□ -0.79
UPF1-211ENST00000600868 RAB4BP61018 213 aa10.1□□□□□ -0.79
UPF1-211ENST00000600868 PHLDA1Q8WV24 401 aaPredicted RBP10.1□□□□□ -0.79
UPF1-211ENST00000600868 WWC2-AS2Q96NR7 200 aa10.1□□□□□ -0.79
UPF1-211ENST00000600868 TGIF2-C20orf24A0A0A6YYL0 155 aa10.09□□□□□ -0.79
UPF1-211ENST00000600868 COX19Q49B96 90 aa10.09□□□□□ -0.79
UPF1-211ENST00000600868 PRO0255Q9UI72 69 aa10.09□□□□□ -0.79
UPF1-211ENST00000600868 HHLA3Q9XRX5 114 aa10.09□□□□□ -0.79
UPF1-211ENST00000600868 TRBV6-4A0A1B0GX49 114 aa10.08□□□□□ -0.8
UPF1-211ENST00000600868 SCO1O75880 301 aa10.08□□□□□ -0.8
UPF1-211ENST00000600868 CRYBA4P53673 196 aa10.08□□□□□ -0.8
UPF1-211ENST00000600868 ZNF56Q15929 161 aa10.08□□□□□ -0.8
UPF1-211ENST00000600868 FAM104BQ5XKR9 115 aa10.08□□□□□ -0.8
UPF1-211ENST00000600868 FRZBQ92765 325 aa10.08□□□□□ -0.8
UPF1-211ENST00000600868 RNF185Q96GF1 192 aa10.08□□□□□ -0.8
UPF1-211ENST00000600868 F5H697 171 aa10.07□□□□□ -0.8
UPF1-211ENST00000600868 MGPP08493 103 aa10.07□□□□□ -0.8
UPF1-211ENST00000600868 RAB4AP20338 218 aa10.07□□□□□ -0.8
UPF1-211ENST00000600868 Q6ZSN1 163 aa10.07□□□□□ -0.8
UPF1-211ENST00000600868 AMN1Q8IY45 258 aa10.07□□□□□ -0.8
UPF1-211ENST00000600868 SLC25A29Q8N8R3 303 aa10.07□□□□□ -0.8
UPF1-211ENST00000600868 FAM210BQ96KR6 192 aa10.07□□□□□ -0.8
UPF1-211ENST00000600868 GNB1LQ9BYB4 327 aa10.07□□□□□ -0.8
UPF1-211ENST00000600868 H3BNG1 76 aa10.06□□□□□ -0.8
UPF1-211ENST00000600868 TMEM136Q6ZRR5 245 aa10.06□□□□□ -0.8
UPF1-211ENST00000600868 TRAV26-1A0A087WT03 109 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 NUPR2A6NF83 97 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 H7C1H1 209 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 K7EQD1 137 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 M0QY20 66 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 PAX4O43316 350 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 HLA-DQA1P01909 254 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 RHOHQ15669 191 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 MRPL51Q4U2R6 128 aaKnown RBP10.05□□□□□ -0.8
UPF1-211ENST00000600868 SUMO4Q6EEV6 95 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 CEMP1Q6PRD7 247 aaPredicted RBP10.05□□□□□ -0.8
UPF1-211ENST00000600868 MUC7Q8TAX7 377 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 MRAP2Q96G30 205 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 VSIG2Q96IQ7 327 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 PRADC1Q9BSG0 188 aa10.05□□□□□ -0.8
UPF1-211ENST00000600868 TRBV10-1A0A0K0K1A3 114 aa10.04□□□□□ -0.8
UPF1-211ENST00000600868 COLCA2A8K830 154 aa10.04□□□□□ -0.8
UPF1-211ENST00000600868 MT-ND6P03923 174 aa10.04□□□□□ -0.8
UPF1-211ENST00000600868 DNAH7Q8WXX0 4024 aa10.03□□□□□ -0.8
UPF1-211ENST00000600868 A0A0J9YY99 117 aa10.03□□□□□ -0.8
UPF1-211ENST00000600868 TRAV26-2A0A0B4J265 109 aa10.02□□□□□ -0.81
UPF1-211ENST00000600868 PPBPP02775 128 aa10.02□□□□□ -0.81
UPF1-211ENST00000600868 P0DMU3 169 aa10.02□□□□□ -0.81
UPF1-211ENST00000600868 FAM231AP0DMU4 169 aa10.02□□□□□ -0.81
UPF1-211ENST00000600868 FAM231CP0DMU5 169 aa10.02□□□□□ -0.81
UPF1-211ENST00000600868 GYPEP15421 78 aa10.02□□□□□ -0.81
UPF1-211ENST00000600868 KLK5Q9Y337 293 aaPredicted RBP10.02□□□□□ -0.81
UPF1-211ENST00000600868 IGLL5B9A064 214 aa10.01□□□□□ -0.81
UPF1-211ENST00000600868 PPP1R17O96001 155 aa10.01□□□□□ -0.81
UPF1-211ENST00000600868 APCSP02743 223 aa10.01□□□□□ -0.81
UPF1-211ENST00000600868 CKS2P33552 79 aa10.01□□□□□ -0.81
UPF1-211ENST00000600868 C15orf53Q8NAA6 179 aa10.01□□□□□ -0.81
UPF1-211ENST00000600868 NEXN-AS1Q8NBZ9 246 aa10.01□□□□□ -0.81
UPF1-211ENST00000600868 DNAJC30Q96LL9 226 aa10.01□□□□□ -0.81
UPF1-211ENST00000600868 NIT2Q9NQR4 276 aa10.01□□□□□ -0.81
UPF1-211ENST00000600868 Q9UF83 564 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms