RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CFC1P0CG37 223 aa15.75■□□□□ 0.11
UPF1-207ENST00000599848 DEFB131BA0A096LNP1 70 aa15.75■□□□□ 0.11
UPF1-207ENST00000599848 LMO4P61968 165 aa15.75■□□□□ 0.11
UPF1-207ENST00000599848 MPDZO75970 2070 aa15.74■□□□□ 0.11
UPF1-207ENST00000599848 UBE2V1Q13404 147 aa15.74■□□□□ 0.11
UPF1-207ENST00000599848 FGF23Q9GZV9 251 aaPredicted RBP15.74■□□□□ 0.11
UPF1-207ENST00000599848 NUP210Q8TEM1 1887 aaPredicted RBP15.74■□□□□ 0.11
UPF1-207ENST00000599848 ZNF726P1Q15940 193 aa15.74■□□□□ 0.11
UPF1-207ENST00000599848 PDE6GP18545 87 aa15.73■□□□□ 0.11
UPF1-207ENST00000599848 C9orf118A6NHY6 69 aa15.73■□□□□ 0.11
UPF1-207ENST00000599848 DEFB125Q8N687 156 aa15.73■□□□□ 0.11
UPF1-207ENST00000599848 ESM1Q9NQ30 184 aa15.73■□□□□ 0.11
UPF1-207ENST00000599848 PHF3Q92576 2039 aaKnown RBP15.73■□□□□ 0.11
UPF1-207ENST00000599848 WFDC11Q8NEX6 87 aa15.73■□□□□ 0.11
UPF1-207ENST00000599848 NREPQ16612 68 aa15.72■□□□□ 0.11
UPF1-207ENST00000599848 UFSP1Q6NVU6 142 aa15.72■□□□□ 0.11
UPF1-207ENST00000599848 ZNF664Q8N3J9 261 aa15.72■□□□□ 0.11
UPF1-207ENST00000599848 GTF3C1Q12789 2109 aa15.72■□□□□ 0.11
UPF1-207ENST00000599848 BAALC-AS2P0C853 105 aa15.72■□□□□ 0.11
UPF1-207ENST00000599848 TINCRA0A1B0GVN0 87 aa15.71■□□□□ 0.11
UPF1-207ENST00000599848 A0A1B0GX51 115 aa15.71■□□□□ 0.11
UPF1-207ENST00000599848 TEX22C9J3V5 150 aa15.71■□□□□ 0.1
UPF1-207ENST00000599848 JMJD7-PLA2G4BH0Y9G9 81 aa15.71■□□□□ 0.1
UPF1-207ENST00000599848 H7C423 109 aa15.7■□□□□ 0.1
UPF1-207ENST00000599848 IGF1P05019 195 aa15.7■□□□□ 0.1
UPF1-207ENST00000599848 TMEM258P61165 79 aa15.7■□□□□ 0.1
UPF1-207ENST00000599848 ZGRF1Q86YA3 2104 aa15.7■□□□□ 0.1
UPF1-207ENST00000599848 TRBV6-1A0A0K0K1D8 114 aa15.7■□□□□ 0.1
UPF1-207ENST00000599848 TRAV12-1A0A0B4J245 112 aa15.69■□□□□ 0.1
UPF1-207ENST00000599848 ODF3L1Q8IXM7 274 aa15.69■□□□□ 0.1
UPF1-207ENST00000599848 ANKRD29Q8N6D5 301 aa15.69■□□□□ 0.1
UPF1-207ENST00000599848 CRYGDP07320 174 aa15.69■□□□□ 0.1
UPF1-207ENST00000599848 SEC61GP60059 68 aa15.69■□□□□ 0.1
UPF1-207ENST00000599848 SPRNQ5BIV9 151 aa15.68■□□□□ 0.1
UPF1-207ENST00000599848 RLFQ13129 1914 aa15.68■□□□□ 0.1
UPF1-207ENST00000599848 IGHV4-4A0A075B6R2 117 aa15.67■□□□□ 0.1
UPF1-207ENST00000599848 ODF3BA8MYP8 253 aa15.67■□□□□ 0.1
UPF1-207ENST00000599848 LY6G6DO95868 133 aa15.67■□□□□ 0.1
UPF1-207ENST00000599848 KIR2DL5BA0A0G2JN68 375 aa15.67■□□□□ 0.1
UPF1-207ENST00000599848 KIR2DL5BA0A0G2JPC4 375 aa15.67■□□□□ 0.1
UPF1-207ENST00000599848 KIR2DL5AQ8N109 375 aa15.67■□□□□ 0.1
UPF1-207ENST00000599848 DEFB4AO15263 64 aa15.67■□□□□ 0.1
UPF1-207ENST00000599848 LINC01620Q4KN68 170 aa15.67■□□□□ 0.1
UPF1-207ENST00000599848 ACACBO00763 2458 aa15.66■□□□□ 0.1
UPF1-207ENST00000599848 MYLKQ15746 1914 aa15.66■□□□□ 0.1
UPF1-207ENST00000599848 DLEU1O43261 78 aa15.66■□□□□ 0.1
UPF1-207ENST00000599848 GAGE12HA6NDE8 117 aa15.66■□□□□ 0.1
UPF1-207ENST00000599848 GTSF1LQ9H1H1 148 aa15.65■□□□□ 0.1
UPF1-207ENST00000599848 IGLC2P0DOY2 106 aa15.65■□□□□ 0.1
UPF1-207ENST00000599848 IGLC3P0DOY3 106 aa15.65■□□□□ 0.1
UPF1-207ENST00000599848 LINC00322Q6ZN03 302 aaPredicted RBP15.65■□□□□ 0.1
UPF1-207ENST00000599848 A0A1W2PNU3 283 aaPredicted RBP15.64■□□□□ 0.1
UPF1-207ENST00000599848 ARTNQ5T4W7 220 aa15.64■□□□□ 0.1
UPF1-207ENST00000599848 ZNF524Q96C55 264 aa15.64■□□□□ 0.1
UPF1-207ENST00000599848 ZNF747Q9BV97 191 aa15.64■□□□□ 0.1
UPF1-207ENST00000599848 PLXNA2O75051 1894 aa15.64■□□□□ 0.09
UPF1-207ENST00000599848 HIGD2BQ4VC39 106 aa15.64■□□□□ 0.09
UPF1-207ENST00000599848 TRAV26-1A0A087WT03 109 aa15.64■□□□□ 0.09
UPF1-207ENST00000599848 A0A0J9YXV3 536 aa15.64■□□□□ 0.09
UPF1-207ENST00000599848 GTSF1Q8WW33 167 aa15.63■□□□□ 0.09
UPF1-207ENST00000599848 TP53BP1Q12888 1972 aaPredicted RBP15.63■□□□□ 0.09
UPF1-207ENST00000599848 ZNF706Q9Y5V0 76 aaPredicted RBP15.63■□□□□ 0.09
UPF1-207ENST00000599848 IGHV1-58A0A0C4DH39 117 aa15.63■□□□□ 0.09
UPF1-207ENST00000599848 COX7BP24311 80 aa15.63■□□□□ 0.09
UPF1-207ENST00000599848 FAM222AQ5U5X8 452 aa15.63■□□□□ 0.09
UPF1-207ENST00000599848 DEFB114Q30KQ6 69 aa15.63■□□□□ 0.09
UPF1-207ENST00000599848 RPL39LQ96EH5 51 aaKnown RBP15.63■□□□□ 0.09
UPF1-207ENST00000599848 PRO3102Q9H379 93 aa15.62■□□□□ 0.09
UPF1-207ENST00000599848 ZFHX2Q9C0A1 2572 aaPredicted RBP15.61■□□□□ 0.09
UPF1-207ENST00000599848 C19orf84I3L1E1 186 aa15.61■□□□□ 0.09
UPF1-207ENST00000599848 IGLL1P15814 213 aa15.61■□□□□ 0.09
UPF1-207ENST00000599848 Q6ZSV7 163 aa15.6■□□□□ 0.09
UPF1-207ENST00000599848 PLA2G2AP14555 144 aa15.6■□□□□ 0.09
UPF1-207ENST00000599848 UBE2D1P51668 147 aa15.6■□□□□ 0.09
UPF1-207ENST00000599848 IGKV2-24A0A0C4DH68 120 aa15.6■□□□□ 0.09
UPF1-207ENST00000599848 K7EP34 96 aa15.6■□□□□ 0.09
UPF1-207ENST00000599848 SMIM20Q8N5G0 67 aa15.6■□□□□ 0.09
UPF1-207ENST00000599848 DKK2Q9UBU2 259 aa15.6■□□□□ 0.09
UPF1-207ENST00000599848 P0DMU3 169 aa15.59■□□□□ 0.09
UPF1-207ENST00000599848 FAM231AP0DMU4 169 aa15.59■□□□□ 0.09
UPF1-207ENST00000599848 FAM231CP0DMU5 169 aa15.59■□□□□ 0.09
UPF1-207ENST00000599848 NOTCH2Q04721 2471 aa15.59■□□□□ 0.09
UPF1-207ENST00000599848 C12orf74Q32Q52 190 aa15.59■□□□□ 0.09
UPF1-207ENST00000599848 RITA1Q96K30 269 aa15.59■□□□□ 0.09
UPF1-207ENST00000599848 TSC2P49815 1807 aa15.59■□□□□ 0.09
UPF1-207ENST00000599848 REG3AQ06141 175 aa15.59■□□□□ 0.09
UPF1-207ENST00000599848 PYY3Q5JQD4 70 aa15.59■□□□□ 0.09
UPF1-207ENST00000599848 A4D1N5 150 aa15.58■□□□□ 0.09
UPF1-207ENST00000599848 CTRLP40313 264 aa15.58■□□□□ 0.09
UPF1-207ENST00000599848 NCR3O14931 201 aa15.58■□□□□ 0.08
UPF1-207ENST00000599848 LINC00574Q9H8X3 128 aa15.58■□□□□ 0.08
UPF1-207ENST00000599848 POLR3KQ9Y2Y1 108 aaPredicted RBP15.57■□□□□ 0.08
UPF1-207ENST00000599848 A0A087WZ39 114 aa15.57■□□□□ 0.08
UPF1-207ENST00000599848 PROP1O75360 226 aa15.57■□□□□ 0.08
UPF1-207ENST00000599848 PATE2Q6UY27 113 aa15.57■□□□□ 0.08
UPF1-207ENST00000599848 A0A1W2PPM0 123 aa15.57■□□□□ 0.08
UPF1-207ENST00000599848 C11orf86A6NJI1 115 aa15.56■□□□□ 0.08
UPF1-207ENST00000599848 TOMM6Q96B49 74 aa15.56■□□□□ 0.08
UPF1-207ENST00000599848 IGHV4-28A0A0C4DH34 117 aa15.56■□□□□ 0.08
UPF1-207ENST00000599848 K7EQG2 157 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms