RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 M0R381 172 aa10.99□□□□□ -0.65
TRIM28-213ENST00000598355 DNAH10OSP0CZ25 163 aa10.99□□□□□ -0.65
TRIM28-213ENST00000598355 WFDC10BQ8IUB3 73 aa10.99□□□□□ -0.65
TRIM28-213ENST00000598355 K7EP13 123 aa10.98□□□□□ -0.65
TRIM28-213ENST00000598355 IGLC6P0CF74 106 aa10.98□□□□□ -0.65
TRIM28-213ENST00000598355 RBFOX3A6NFN3 312 aa10.97□□□□□ -0.65
TRIM28-213ENST00000598355 TNP2Q05952 138 aa10.97□□□□□ -0.65
TRIM28-213ENST00000598355 Q6ZRN7 208 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-213ENST00000598355 C14orf178Q8N769 122 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-213ENST00000598355 Q9UF83 564 aa10.97□□□□□ -0.65
TRIM28-213ENST00000598355 LINC00315P59091 139 aa10.96□□□□□ -0.65
TRIM28-213ENST00000598355 FAM74A4Q5TZK3 123 aa10.96□□□□□ -0.65
TRIM28-213ENST00000598355 BIN3Q9NQY0 253 aa10.96□□□□□ -0.65
TRIM28-213ENST00000598355 LY96Q9Y6Y9 160 aa10.96□□□□□ -0.65
TRIM28-213ENST00000598355 A0A087WWL8 130 aa10.95□□□□□ -0.66
TRIM28-213ENST00000598355 K7EN84 100 aa10.95□□□□□ -0.66
TRIM28-213ENST00000598355 RPS20P60866 119 aaKnown RBP10.95□□□□□ -0.66
TRIM28-213ENST00000598355 LELP1Q5T871 98 aa10.95□□□□□ -0.66
TRIM28-213ENST00000598355 ATP6V0E2Q8NHE4 81 aa10.95□□□□□ -0.66
TRIM28-213ENST00000598355 FAM210AQ96ND0 272 aa10.95□□□□□ -0.66
TRIM28-213ENST00000598355 GTSF1LQ9H1H1 148 aa10.95□□□□□ -0.66
TRIM28-213ENST00000598355 TRBV10-1A0A0K0K1A3 114 aa10.94□□□□□ -0.66
TRIM28-213ENST00000598355 LINC01556Q5JQF7 62 aa10.94□□□□□ -0.66
TRIM28-213ENST00000598355 TOR2AQ5JU69 321 aa10.94□□□□□ -0.66
TRIM28-213ENST00000598355 OR2D3Q8NGH3 330 aa10.94□□□□□ -0.66
TRIM28-213ENST00000598355 DAZAP1Q96EP5 407 aaKnown RBP10.94□□□□□ -0.66
TRIM28-213ENST00000598355 KIF25-AS1Q9Y6Z4 181 aa10.94□□□□□ -0.66
TRIM28-213ENST00000598355 P01737 135 aa10.93□□□□□ -0.66
TRIM28-213ENST00000598355 GZMBP10144 247 aa10.93□□□□□ -0.66
TRIM28-213ENST00000598355 FER1L6-AS1Q8NA97 138 aa10.93□□□□□ -0.66
TRIM28-213ENST00000598355 OCC1Q8TAD7 63 aa10.93□□□□□ -0.66
TRIM28-213ENST00000598355 DNAH11Q96DT5 4516 aa10.93□□□□□ -0.66
TRIM28-213ENST00000598355 IGHV3-38A0A0C4DH36 116 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 GAGE12JA6NER3 117 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 CTRLP40313 264 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 RAB4BP61018 213 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 GAGE1Q13065 139 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 GAGE4Q13068 117 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 GAGE5Q13069 117 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 GAGE13Q4V321 117 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 SPANXN1Q5VSR9 72 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 TEX261Q6UWH6 196 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 NUDT10Q8NFP7 164 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 OR10G8Q8NGN5 311 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 NUDT11Q96G61 164 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 AP1S3Q96PC3 154 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 CNFNQ9BYD5 112 aa10.92□□□□□ -0.66
TRIM28-213ENST00000598355 XKRY2A2RUG3 117 aa10.91□□□□□ -0.66
TRIM28-213ENST00000598355 EVI2AP22794 236 aa10.91□□□□□ -0.66
TRIM28-213ENST00000598355 C10orf126Q8N4M7 172 aa10.91□□□□□ -0.66
TRIM28-213ENST00000598355 DYNC1H1Q14204 4646 aaKnown RBP10.91□□□□□ -0.66
TRIM28-213ENST00000598355 TRAV9-2A0A087WT02 112 aa10.9□□□□□ -0.66
TRIM28-213ENST00000598355 TRAV8-6A0A0B4J262 113 aa10.9□□□□□ -0.66
TRIM28-213ENST00000598355 MUC21A0A0G2JKD1 596 aa10.9□□□□□ -0.66
TRIM28-213ENST00000598355 MUC21A0A140T8X8 626 aa10.9□□□□□ -0.66
TRIM28-213ENST00000598355 F2Z2F3 143 aa10.9□□□□□ -0.66
TRIM28-213ENST00000598355 FAM231DQ6ZW35 169 aa10.9□□□□□ -0.66
TRIM28-213ENST00000598355 RPP21Q9H633 154 aaKnown RBP10.9□□□□□ -0.66
TRIM28-213ENST00000598355 A0A087WWC5 75 aa10.89□□□□□ -0.67
TRIM28-213ENST00000598355 SRP19P09132 144 aaKnown RBP10.89□□□□□ -0.67
TRIM28-213ENST00000598355 UBE2D3P61077 147 aa10.89□□□□□ -0.67
TRIM28-213ENST00000598355 UBE2D2P62837 147 aa10.89□□□□□ -0.67
TRIM28-213ENST00000598355 CACNG7P62955 275 aa10.89□□□□□ -0.67
TRIM28-213ENST00000598355 ZNF56Q15929 161 aa10.89□□□□□ -0.67
TRIM28-213ENST00000598355 OR10J3Q5JRS4 329 aa10.89□□□□□ -0.67
TRIM28-213ENST00000598355 RNASE7Q9H1E1 156 aaKnown RBP10.89□□□□□ -0.67
TRIM28-213ENST00000598355 TRBV7-3A0A075B6L6 115 aa10.88□□□□□ -0.67
TRIM28-213ENST00000598355 RPL36AP83881 106 aaKnown RBP10.88□□□□□ -0.67
TRIM28-213ENST00000598355 WDR73Q6P4I2 378 aa10.88□□□□□ -0.67
TRIM28-213ENST00000598355 NFE4Q86UQ8 179 aa10.88□□□□□ -0.67
TRIM28-213ENST00000598355 NEXN-AS1Q8NBZ9 246 aa10.88□□□□□ -0.67
TRIM28-213ENST00000598355 RPL36ALQ969Q0 106 aaKnown RBP10.88□□□□□ -0.67
TRIM28-213ENST00000598355 EIF5A2Q9GZV4 153 aaKnown RBP10.88□□□□□ -0.67
TRIM28-213ENST00000598355 MSRB1Q9NZV6 116 aa10.88□□□□□ -0.67
TRIM28-213ENST00000598355 LYZL1Q6UWQ5 148 aa10.87□□□□□ -0.67
TRIM28-213ENST00000598355 LINC01551Q86U37 167 aa10.87□□□□□ -0.67
TRIM28-213ENST00000598355 SMIM7Q9BQ49 75 aa10.87□□□□□ -0.67
TRIM28-213ENST00000598355 TNFRSF18Q9Y5U5 241 aa10.87□□□□□ -0.67
TRIM28-213ENST00000598355 IBA57-AS1B1ANH7 110 aa10.86□□□□□ -0.67
TRIM28-213ENST00000598355 LAGE3Q14657 143 aa10.86□□□□□ -0.67
TRIM28-213ENST00000598355 CT83Q5H943 113 aa10.86□□□□□ -0.67
TRIM28-213ENST00000598355 TPPP3Q9BW30 176 aa10.86□□□□□ -0.67
TRIM28-213ENST00000598355 GTSF1Q8WW33 167 aa10.85□□□□□ -0.67
TRIM28-213ENST00000598355 KIAA1109Q2LD37 5005 aa10.85□□□□□ -0.67
TRIM28-213ENST00000598355 TRGC1P0CF51 173 aa10.84□□□□□ -0.67
TRIM28-213ENST00000598355 SMIM17P0DL12 118 aa10.84□□□□□ -0.67
TRIM28-213ENST00000598355 NTF3P20783 257 aa10.84□□□□□ -0.67
TRIM28-213ENST00000598355 Q8N3U1 123 aa10.84□□□□□ -0.67
TRIM28-213ENST00000598355 ZNF727A8MUV8 499 aa10.83□□□□□ -0.68
TRIM28-213ENST00000598355 C9JQL5 133 aa10.83□□□□□ -0.68
TRIM28-213ENST00000598355 M0QY20 66 aa10.83□□□□□ -0.68
TRIM28-213ENST00000598355 CEBPGP53567 150 aa10.83□□□□□ -0.68
TRIM28-213ENST00000598355 FOXA3P55318 350 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-213ENST00000598355 SSTP61278 116 aa10.83□□□□□ -0.68
TRIM28-213ENST00000598355 NIT1Q86X76 327 aa10.83□□□□□ -0.68
TRIM28-213ENST00000598355 DPH3P1Q9H4G8 78 aa10.83□□□□□ -0.68
TRIM28-213ENST00000598355 SMDT1Q9H4I9 107 aa10.83□□□□□ -0.68
TRIM28-213ENST00000598355 A8MWL6 223 aa10.82□□□□□ -0.68
TRIM28-213ENST00000598355 GATCO43716 136 aaKnown RBP10.82□□□□□ -0.68
TRIM28-213ENST00000598355 IGHV3-30P01768 117 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 112.1 ms