RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MEF2BQ02080 365 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-205ENST00000595028 CENPWQ5EE01 88 aa10.25□□□□□ -0.77
TRIM28-205ENST00000595028 FAM74A4Q5TZK3 123 aa10.25□□□□□ -0.77
TRIM28-205ENST00000595028 PRR27Q6MZM9 219 aa10.25□□□□□ -0.77
TRIM28-205ENST00000595028 SFRP2Q96HF1 295 aa10.24□□□□□ -0.77
TRIM28-205ENST00000595028 GTSF1LQ9H1H1 148 aa10.24□□□□□ -0.77
TRIM28-205ENST00000595028 UBR4Q5T4S7 5183 aa10.24□□□□□ -0.77
TRIM28-205ENST00000595028 A0A087WWL8 130 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 IGHV3-38A0A0C4DH36 116 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 GAGE12JA6NER3 117 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 PDE6DO43924 150 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 GAGE1Q13065 139 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 GAGE4Q13068 117 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 GAGE5Q13069 117 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 GAGE13Q4V321 117 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 OR10J3Q5JRS4 329 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 LELP1Q5T871 98 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 NFE4Q86UQ8 179 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 C10orf126Q8N4M7 172 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 C14orf178Q8N769 122 aaPredicted RBP10.23□□□□□ -0.77
TRIM28-205ENST00000595028 OR10AG1Q8NH19 301 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 ATP6V0E2Q8NHE4 81 aa10.23□□□□□ -0.77
TRIM28-205ENST00000595028 TRAV8-6A0A0B4J262 113 aa10.22□□□□□ -0.77
TRIM28-205ENST00000595028 C16orf90A8MZG2 172 aa10.22□□□□□ -0.77
TRIM28-205ENST00000595028 SNAI2O43623 268 aa10.22□□□□□ -0.77
TRIM28-205ENST00000595028 CDK2AP2O75956 126 aa10.22□□□□□ -0.77
TRIM28-205ENST00000595028 CRYGDP07320 174 aa10.22□□□□□ -0.77
TRIM28-205ENST00000595028 NKX2-5P52952 324 aaPredicted RBP10.22□□□□□ -0.77
TRIM28-205ENST00000595028 LINC01556Q5JQF7 62 aa10.22□□□□□ -0.77
TRIM28-205ENST00000595028 SPATA12Q7Z6I5 190 aa10.22□□□□□ -0.77
TRIM28-205ENST00000595028 MSRB1Q9NZV6 116 aa10.22□□□□□ -0.77
TRIM28-205ENST00000595028 TNFRSF18Q9Y5U5 241 aa10.22□□□□□ -0.77
TRIM28-205ENST00000595028 IGLV2-8P01709 118 aa10.21□□□□□ -0.77
TRIM28-205ENST00000595028 OR5AL1P0C617 328 aa10.21□□□□□ -0.77
TRIM28-205ENST00000595028 TAGLN2P37802 199 aaKnown RBP10.21□□□□□ -0.77
TRIM28-205ENST00000595028 GNG4P50150 75 aa10.21□□□□□ -0.77
TRIM28-205ENST00000595028 SMIM12Q96EX1 92 aa10.21□□□□□ -0.77
TRIM28-205ENST00000595028 SSBP4Q9BWG4 385 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-205ENST00000595028 Q9UF83 564 aa10.21□□□□□ -0.77
TRIM28-205ENST00000595028 BOLA1Q9Y3E2 137 aa10.21□□□□□ -0.77
TRIM28-205ENST00000595028 MED9Q9NWA0 146 aa10.2□□□□□ -0.78
TRIM28-205ENST00000595028 VAX2Q9UIW0 290 aa10.2□□□□□ -0.78
TRIM28-205ENST00000595028 TRBV20OR9-2A0A075B6H5 130 aa10.19□□□□□ -0.78
TRIM28-205ENST00000595028 RAB19A4D1S5 217 aa10.19□□□□□ -0.78
TRIM28-205ENST00000595028 KRTAP10-2P60368 255 aa10.19□□□□□ -0.78
TRIM28-205ENST00000595028 ERVFC1-1P60608 527 aa10.19□□□□□ -0.78
TRIM28-205ENST00000595028 ALKAL2Q6UX46 152 aa10.19□□□□□ -0.78
TRIM28-205ENST00000595028 Q8N1X5 172 aa10.19□□□□□ -0.78
TRIM28-205ENST00000595028 TRBV10-1A0A0K0K1A3 114 aa10.18□□□□□ -0.78
TRIM28-205ENST00000595028 C19orf71A6NCJ1 209 aa10.18□□□□□ -0.78
TRIM28-205ENST00000595028 MUC21A0A0G2JKD1 596 aa10.17□□□□□ -0.78
TRIM28-205ENST00000595028 MUC21A0A140T8X8 626 aa10.17□□□□□ -0.78
TRIM28-205ENST00000595028 SPANXN1Q5VSR9 72 aa10.17□□□□□ -0.78
TRIM28-205ENST00000595028 DAZAP1Q96EP5 407 aaKnown RBP10.17□□□□□ -0.78
TRIM28-205ENST00000595028 A0A087WWC5 75 aa10.16□□□□□ -0.78
TRIM28-205ENST00000595028 IBA57-AS1B1ANH7 110 aa10.16□□□□□ -0.78
TRIM28-205ENST00000595028 IGHV3-30P01768 117 aa10.16□□□□□ -0.78
TRIM28-205ENST00000595028 IGHV3-33P01772 117 aa10.16□□□□□ -0.78
TRIM28-205ENST00000595028 IGLC6P0CF74 106 aa10.16□□□□□ -0.78
TRIM28-205ENST00000595028 IGHV3-30-3P0DP02 117 aa10.16□□□□□ -0.78
TRIM28-205ENST00000595028 IGHV3-30-5P0DP03 117 aa10.16□□□□□ -0.78
TRIM28-205ENST00000595028 RPS20P60866 119 aaKnown RBP10.16□□□□□ -0.78
TRIM28-205ENST00000595028 BLOC1S1P78537 153 aa10.16□□□□□ -0.78
TRIM28-205ENST00000595028 ZNF56Q15929 161 aa10.16□□□□□ -0.78
TRIM28-205ENST00000595028 OR2D3Q8NGH3 330 aa10.16□□□□□ -0.78
TRIM28-205ENST00000595028 AP1S3Q96PC3 154 aa10.16□□□□□ -0.78
TRIM28-205ENST00000595028 A0A087WTM6 91 aa10.15□□□□□ -0.78
TRIM28-205ENST00000595028 EREGO14944 169 aa10.15□□□□□ -0.78
TRIM28-205ENST00000595028 P01737 135 aa10.15□□□□□ -0.78
TRIM28-205ENST00000595028 GZMBP10144 247 aa10.15□□□□□ -0.78
TRIM28-205ENST00000595028 RAB4BP61018 213 aa10.15□□□□□ -0.78
TRIM28-205ENST00000595028 RPL36AP83881 106 aaKnown RBP10.15□□□□□ -0.78
TRIM28-205ENST00000595028 LAGE3Q14657 143 aa10.15□□□□□ -0.78
TRIM28-205ENST00000595028 Q8N3U1 123 aa10.15□□□□□ -0.78
TRIM28-205ENST00000595028 FER1L6-AS1Q8NA97 138 aa10.15□□□□□ -0.78
TRIM28-205ENST00000595028 OR10G8Q8NGN5 311 aa10.15□□□□□ -0.78
TRIM28-205ENST00000595028 RPL36ALQ969Q0 106 aaKnown RBP10.15□□□□□ -0.78
TRIM28-205ENST00000595028 BIN3Q9NQY0 253 aa10.15□□□□□ -0.78
TRIM28-205ENST00000595028 UBE2D3P61077 147 aa10.14□□□□□ -0.79
TRIM28-205ENST00000595028 UBE2D2P62837 147 aa10.14□□□□□ -0.79
TRIM28-205ENST00000595028 LYPD6BQ8NI32 183 aa10.14□□□□□ -0.79
TRIM28-205ENST00000595028 TPPP3Q9BW30 176 aa10.14□□□□□ -0.79
TRIM28-205ENST00000595028 TRBV7-3A0A075B6L6 115 aa10.13□□□□□ -0.79
TRIM28-205ENST00000595028 XKRY2A2RUG3 117 aa10.13□□□□□ -0.79
TRIM28-205ENST00000595028 RBFOX3A6NFN3 312 aa10.13□□□□□ -0.79
TRIM28-205ENST00000595028 SSTP61278 116 aa10.13□□□□□ -0.79
TRIM28-205ENST00000595028 NEXN-AS1Q8NBZ9 246 aa10.13□□□□□ -0.79
TRIM28-205ENST00000595028 Q9HAA7 133 aa10.13□□□□□ -0.79
TRIM28-205ENST00000595028 KIF25-AS1Q9Y6Z4 181 aa10.13□□□□□ -0.79
TRIM28-205ENST00000595028 MYCBP2O75592 4640 aa10.12□□□□□ -0.79
TRIM28-205ENST00000595028 TMEM250H0YL14 139 aa10.12□□□□□ -0.79
TRIM28-205ENST00000595028 SMIM17P0DL12 118 aa10.12□□□□□ -0.79
TRIM28-205ENST00000595028 CACNG7P62955 275 aa10.12□□□□□ -0.79
TRIM28-205ENST00000595028 CDPF1Q6NVV7 123 aa10.12□□□□□ -0.79
TRIM28-205ENST00000595028 K7EN84 100 aa10.11□□□□□ -0.79
TRIM28-205ENST00000595028 PSCAO43653 123 aa10.11□□□□□ -0.79
TRIM28-205ENST00000595028 F5H697 171 aa10.1□□□□□ -0.79
TRIM28-205ENST00000595028 CTRLP40313 264 aa10.1□□□□□ -0.79
TRIM28-205ENST00000595028 TOR2AQ5JU69 321 aa10.1□□□□□ -0.79
TRIM28-205ENST00000595028 DAZ4Q86SG3 579 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms