RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 FAM74A4Q5TZK3 123 aa12.04□□□□□ -0.48
SHKBP1-204ENST00000594862 PRR27Q6MZM9 219 aa12.04□□□□□ -0.48
SHKBP1-204ENST00000594862 TRBV10-1A0A0K0K1A3 114 aa12.03□□□□□ -0.48
SHKBP1-204ENST00000594862 LINC00694P0DN24 101 aa12.03□□□□□ -0.48
SHKBP1-204ENST00000594862 BCL2P10415 239 aa12.03□□□□□ -0.48
SHKBP1-204ENST00000594862 SPATA12Q7Z6I5 190 aa12.03□□□□□ -0.48
SHKBP1-204ENST00000594862 C9orf62Q8N4C0 152 aa12.03□□□□□ -0.48
SHKBP1-204ENST00000594862 SAMD10Q9BYL1 202 aa12.03□□□□□ -0.48
SHKBP1-204ENST00000594862 JPT2Q9H910 190 aa12.03□□□□□ -0.48
SHKBP1-204ENST00000594862 BIN3Q9NQY0 253 aa12.03□□□□□ -0.48
SHKBP1-204ENST00000594862 GAGE12JA6NER3 117 aa12.02□□□□□ -0.49
SHKBP1-204ENST00000594862 OR5AL1P0C617 328 aa12.02□□□□□ -0.49
SHKBP1-204ENST00000594862 GNG4P50150 75 aa12.02□□□□□ -0.49
SHKBP1-204ENST00000594862 GAGE1Q13065 139 aa12.02□□□□□ -0.49
SHKBP1-204ENST00000594862 GAGE4Q13068 117 aa12.02□□□□□ -0.49
SHKBP1-204ENST00000594862 GAGE5Q13069 117 aa12.02□□□□□ -0.49
SHKBP1-204ENST00000594862 GAGE13Q4V321 117 aa12.02□□□□□ -0.49
SHKBP1-204ENST00000594862 CENPWQ5EE01 88 aa12.02□□□□□ -0.49
SHKBP1-204ENST00000594862 VAX2Q9UIW0 290 aa12.02□□□□□ -0.49
SHKBP1-204ENST00000594862 hCG_2014768A0A024R1R8 64 aa12.01□□□□□ -0.49
SHKBP1-204ENST00000594862 SNAI2O43623 268 aa12.01□□□□□ -0.49
SHKBP1-204ENST00000594862 RPS20P60866 119 aaKnown RBP12.01□□□□□ -0.49
SHKBP1-204ENST00000594862 Q6ZSN1 163 aa12.01□□□□□ -0.49
SHKBP1-204ENST00000594862 DAZAP1Q96EP5 407 aaKnown RBP12.01□□□□□ -0.49
SHKBP1-204ENST00000594862 DERL1Q9BUN8 251 aa12.01□□□□□ -0.49
SHKBP1-204ENST00000594862 SSBP4Q9BWG4 385 aaPredicted RBP12.01□□□□□ -0.49
SHKBP1-204ENST00000594862 DYNC1H1Q14204 4646 aaKnown RBP12□□□□□ -0.49
SHKBP1-204ENST00000594862 A0A087WWL8 130 aa12□□□□□ -0.49
SHKBP1-204ENST00000594862 CDK2AP2O75956 126 aa12□□□□□ -0.49
SHKBP1-204ENST00000594862 RPL19P84098 196 aaKnown RBP12□□□□□ -0.49
SHKBP1-204ENST00000594862 LAGE3Q14657 143 aa12□□□□□ -0.49
SHKBP1-204ENST00000594862 SPANXN1Q5VSR9 72 aa12□□□□□ -0.49
SHKBP1-204ENST00000594862 CDPF1Q6NVV7 123 aa12□□□□□ -0.49
SHKBP1-204ENST00000594862 MED9Q9NWA0 146 aa12□□□□□ -0.49
SHKBP1-204ENST00000594862 DNAH11Q96DT5 4516 aa11.99□□□□□ -0.49
SHKBP1-204ENST00000594862 XKRY2A2RUG3 117 aa11.99□□□□□ -0.49
SHKBP1-204ENST00000594862 IBA57-AS1B1ANH7 110 aa11.99□□□□□ -0.49
SHKBP1-204ENST00000594862 RAB4BP61018 213 aa11.99□□□□□ -0.49
SHKBP1-204ENST00000594862 BLOC1S1P78537 153 aa11.99□□□□□ -0.49
SHKBP1-204ENST00000594862 RPL36AP83881 106 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-204ENST00000594862 C14orf178Q8N769 122 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-204ENST00000594862 OR10AG1Q8NH19 301 aa11.99□□□□□ -0.49
SHKBP1-204ENST00000594862 RPL36ALQ969Q0 106 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-204ENST00000594862 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.98□□□□□ -0.49
SHKBP1-204ENST00000594862 AP1S3Q96PC3 154 aa11.98□□□□□ -0.49
SHKBP1-204ENST00000594862 PGPEP1Q9NXJ5 209 aa11.98□□□□□ -0.49
SHKBP1-204ENST00000594862 SMIM17P0DL12 118 aa11.97□□□□□ -0.49
SHKBP1-204ENST00000594862 ZNF56Q15929 161 aa11.97□□□□□ -0.49
SHKBP1-204ENST00000594862 TOR2AQ5JU69 321 aa11.97□□□□□ -0.49
SHKBP1-204ENST00000594862 PSCAO43653 123 aa11.96□□□□□ -0.49
SHKBP1-204ENST00000594862 P01737 135 aa11.96□□□□□ -0.49
SHKBP1-204ENST00000594862 OR2D3Q8NGH3 330 aa11.96□□□□□ -0.49
SHKBP1-204ENST00000594862 OR10G8Q8NGN5 311 aa11.96□□□□□ -0.49
SHKBP1-204ENST00000594862 TNFRSF18Q9Y5U5 241 aa11.96□□□□□ -0.49
SHKBP1-204ENST00000594862 TRBV7-3A0A075B6L6 115 aa11.95□□□□□ -0.5
SHKBP1-204ENST00000594862 A0A087WTM6 91 aa11.95□□□□□ -0.5
SHKBP1-204ENST00000594862 C19orf71A6NCJ1 209 aa11.95□□□□□ -0.5
SHKBP1-204ENST00000594862 IGLV2-8P01709 118 aa11.95□□□□□ -0.5
SHKBP1-204ENST00000594862 KRTAP10-2P60368 255 aa11.95□□□□□ -0.5
SHKBP1-204ENST00000594862 CACNG7P62955 275 aa11.95□□□□□ -0.5
SHKBP1-204ENST00000594862 FER1L6-AS1Q8NA97 138 aa11.95□□□□□ -0.5
SHKBP1-204ENST00000594862 URGCP-MRPS24S4R325 110 aa11.95□□□□□ -0.5
SHKBP1-204ENST00000594862 ABCA13Q86UQ4 5058 aa11.95□□□□□ -0.5
SHKBP1-204ENST00000594862 RAB19A4D1S5 217 aa11.94□□□□□ -0.5
SHKBP1-204ENST00000594862 IGHV3-30P01768 117 aa11.94□□□□□ -0.5
SHKBP1-204ENST00000594862 IGHV3-33P01772 117 aa11.94□□□□□ -0.5
SHKBP1-204ENST00000594862 IGHV3-30-3P0DP02 117 aa11.94□□□□□ -0.5
SHKBP1-204ENST00000594862 IGHV3-30-5P0DP03 117 aa11.94□□□□□ -0.5
SHKBP1-204ENST00000594862 ALKAL2Q6UX46 152 aa11.94□□□□□ -0.5
SHKBP1-204ENST00000594862 CHCHD7Q9BUK0 85 aa11.94□□□□□ -0.5
SHKBP1-204ENST00000594862 TM2D2Q9BX73 214 aa11.94□□□□□ -0.5
SHKBP1-204ENST00000594862 TRAV8-3A0A0A6YYJ7 113 aa11.93□□□□□ -0.5
SHKBP1-204ENST00000594862 F2Z2F3 143 aa11.93□□□□□ -0.5
SHKBP1-204ENST00000594862 TMEM250H0YL14 139 aa11.93□□□□□ -0.5
SHKBP1-204ENST00000594862 IGLC6P0CF74 106 aa11.93□□□□□ -0.5
SHKBP1-204ENST00000594862 UBE2D3P61077 147 aa11.93□□□□□ -0.5
SHKBP1-204ENST00000594862 UBE2D2P62837 147 aa11.93□□□□□ -0.5
SHKBP1-204ENST00000594862 KCNIP4Q6PIL6 250 aa11.93□□□□□ -0.5
SHKBP1-204ENST00000594862 KRTAP4-5Q9BYR2 181 aa11.93□□□□□ -0.5
SHKBP1-204ENST00000594862 TRBV20OR9-2A0A075B6H5 130 aa11.92□□□□□ -0.5
SHKBP1-204ENST00000594862 F5H697 171 aa11.92□□□□□ -0.5
SHKBP1-204ENST00000594862 TMEM97Q5BJF2 176 aa11.92□□□□□ -0.5
SHKBP1-204ENST00000594862 Q9HAA7 133 aa11.92□□□□□ -0.5
SHKBP1-204ENST00000594862 Q9UF83 564 aa11.92□□□□□ -0.5
SHKBP1-204ENST00000594862 H7C1H1 209 aa11.91□□□□□ -0.5
SHKBP1-204ENST00000594862 PKIAP61925 76 aa11.91□□□□□ -0.5
SHKBP1-204ENST00000594862 ELOBQ15370 118 aa11.91□□□□□ -0.5
SHKBP1-204ENST00000594862 RMI2Q96E14 147 aa11.91□□□□□ -0.5
SHKBP1-204ENST00000594862 TPPP3Q9BW30 176 aa11.91□□□□□ -0.5
SHKBP1-204ENST00000594862 COX11Q9Y6N1 276 aa11.91□□□□□ -0.5
SHKBP1-204ENST00000594862 RBFOX3A6NFN3 312 aa11.9□□□□□ -0.5
SHKBP1-204ENST00000594862 TRGC1P0CF51 173 aa11.9□□□□□ -0.5
SHKBP1-204ENST00000594862 LYPD6BQ8NI32 183 aa11.9□□□□□ -0.5
SHKBP1-204ENST00000594862 A0A087WX48 190 aa11.89□□□□□ -0.51
SHKBP1-204ENST00000594862 MUC21A0A0G2JKD1 596 aa11.89□□□□□ -0.51
SHKBP1-204ENST00000594862 MUC21A0A140T8X8 626 aa11.89□□□□□ -0.51
SHKBP1-204ENST00000594862 NDUFS6O75380 124 aaKnown RBP11.89□□□□□ -0.51
SHKBP1-204ENST00000594862 NIT1Q86X76 327 aa11.89□□□□□ -0.51
SHKBP1-204ENST00000594862 NEXN-AS1Q8NBZ9 246 aa11.89□□□□□ -0.51
SHKBP1-204ENST00000594862 NTN5Q8WTR8 489 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms