RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 C5orf52A6NGY3 159 aa7.53□□□□□ -1.2
VPS4B-204ENST00000589604 CBY3A6NI87 242 aa7.53□□□□□ -1.2
VPS4B-204ENST00000589604 EVI2AP22794 236 aa7.53□□□□□ -1.2
VPS4B-204ENST00000589604 SPANXN1Q5VSR9 72 aa7.53□□□□□ -1.2
VPS4B-204ENST00000589604 ZNF705AQ6ZN79 300 aaPredicted RBP7.53□□□□□ -1.2
VPS4B-204ENST00000589604 AMN1Q8IY45 258 aa7.53□□□□□ -1.2
VPS4B-204ENST00000589604 ALKBH7Q9BT30 221 aaPredicted RBP7.53□□□□□ -1.2
VPS4B-204ENST00000589604 PHLDA3Q9Y5J5 127 aa7.53□□□□□ -1.2
VPS4B-204ENST00000589604 KIF25-AS1Q9Y6Z4 181 aa7.53□□□□□ -1.2
VPS4B-204ENST00000589604 LOC105371267A0A1B0GV96 52 aa7.52□□□□□ -1.21
VPS4B-204ENST00000589604 A4D1N5 150 aa7.52□□□□□ -1.21
VPS4B-204ENST00000589604 M0R381 172 aa7.52□□□□□ -1.21
VPS4B-204ENST00000589604 HTN1P15515 57 aa7.52□□□□□ -1.21
VPS4B-204ENST00000589604 RAB4AP20338 218 aa7.52□□□□□ -1.21
VPS4B-204ENST00000589604 LINC00315P59091 139 aa7.52□□□□□ -1.21
VPS4B-204ENST00000589604 MRPL51Q4U2R6 128 aaKnown RBP7.52□□□□□ -1.21
VPS4B-204ENST00000589604 COA6Q5JTJ3 125 aaKnown RBP7.52□□□□□ -1.21
VPS4B-204ENST00000589604 IL17DQ8TAD2 202 aa7.52□□□□□ -1.21
VPS4B-204ENST00000589604 SPXQ9BT56 116 aa7.52□□□□□ -1.21
VPS4B-204ENST00000589604 C1QTNF4Q9BXJ3 329 aa7.52□□□□□ -1.21
VPS4B-204ENST00000589604 JPT2Q9H910 190 aa7.52□□□□□ -1.21
VPS4B-204ENST00000589604 U3KQK5 164 aa7.52□□□□□ -1.21
VPS4B-204ENST00000589604 PLAC8L1A1L4L8 177 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 SRIP30626 198 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 NDUFA6P56556 154 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 LINC00310P59036 64 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 RNASE8Q8TDE3 154 aaKnown RBP7.51□□□□□ -1.21
VPS4B-204ENST00000589604 GSN-AS1Q9NRJ2 163 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 IGHV3OR16-12A0A075B7B8 117 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 KIR2DL5BA0A0G2JN68 375 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 KIR2DL5BA0A0G2JPC4 375 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 GAS8-AS1O95177 125 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 SNRPEP62304 92 aaKnown RBP7.51□□□□□ -1.21
VPS4B-204ENST00000589604 Q0VG73 95 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 DEFB135Q30KP9 77 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 KIR2DL5AQ8N109 375 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 POM121L12Q8N7R1 296 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 KIR2DL5BQ8NHK3 375 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 PTH2Q96A98 100 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 OVOL2Q9BRP0 275 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 GOLT1BQ9Y3E0 138 aa7.51□□□□□ -1.21
VPS4B-204ENST00000589604 NUPR1O60356 82 aa7.5□□□□□ -1.21
VPS4B-204ENST00000589604 HOXA5P20719 270 aa7.5□□□□□ -1.21
VPS4B-204ENST00000589604 ZNF415Q09FC8 603 aa7.5□□□□□ -1.21
VPS4B-204ENST00000589604 C18orf32Q8TCD1 76 aa7.5□□□□□ -1.21
VPS4B-204ENST00000589604 TMEM208Q9BTX3 173 aa7.5□□□□□ -1.21
VPS4B-204ENST00000589604 IFITM10A6NMD0 228 aa7.49□□□□□ -1.21
VPS4B-204ENST00000589604 SMKR1H3BMG3 65 aa7.49□□□□□ -1.21
VPS4B-204ENST00000589604 CRYGDP07320 174 aa7.49□□□□□ -1.21
VPS4B-204ENST00000589604 APOC4P55056 127 aa7.49□□□□□ -1.21
VPS4B-204ENST00000589604 PIK3CD-AS1Q5SR53 167 aa7.49□□□□□ -1.21
VPS4B-204ENST00000589604 C14orf178Q8N769 122 aaPredicted RBP7.49□□□□□ -1.21
VPS4B-204ENST00000589604 TMEM263Q8WUH6 116 aaKnown RBP7.49□□□□□ -1.21
VPS4B-204ENST00000589604 RCHY1Q96PM5 261 aa7.49□□□□□ -1.21
VPS4B-204ENST00000589604 SAMD10Q9BYL1 202 aa7.49□□□□□ -1.21
VPS4B-204ENST00000589604 D6R8Y8 96 aa7.48□□□□□ -1.21
VPS4B-204ENST00000589604 M0R2P5 195 aa7.48□□□□□ -1.21
VPS4B-204ENST00000589604 GATA1P15976 413 aaPredicted RBP7.48□□□□□ -1.21
VPS4B-204ENST00000589604 IQCJQ1A5X6 159 aa7.48□□□□□ -1.21
VPS4B-204ENST00000589604 ZNF876PQ49A33 203 aa7.48□□□□□ -1.21
VPS4B-204ENST00000589604 OR10J3Q5JRS4 329 aa7.48□□□□□ -1.21
VPS4B-204ENST00000589604 Q6ZWC4 215 aa7.48□□□□□ -1.21
VPS4B-204ENST00000589604 RNF183Q96D59 192 aa7.48□□□□□ -1.21
VPS4B-204ENST00000589604 URB1-AS1Q96HZ7 61 aa7.48□□□□□ -1.21
VPS4B-204ENST00000589604 DPH3P1Q9H4G8 78 aa7.48□□□□□ -1.21
VPS4B-204ENST00000589604 NCR2O95944 276 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 S100A6P06703 90 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 UFSP1Q6NVU6 142 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 SYT8Q8NBV8 401 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 AP1S3Q96PC3 154 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 SPATA25Q9BR10 227 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 TRAV26-2A0A0B4J265 109 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 NPYP01303 97 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 NHLRC4P0CG21 123 aaPredicted RBP7.47□□□□□ -1.21
VPS4B-204ENST00000589604 PTTG1IPP53801 180 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 DAZ2Q13117 558 aaKnown RBP7.47□□□□□ -1.21
VPS4B-204ENST00000589604 ORMDL3Q8N138 153 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 HIST3H2BBQ8N257 126 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 NRACQ8N912 160 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 RASL10AQ92737 203 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 PRELID3AQ96N28 172 aa7.47□□□□□ -1.21
VPS4B-204ENST00000589604 DNAH7Q8WXX0 4024 aa7.46□□□□□ -1.22
VPS4B-204ENST00000589604 SERF1AO75920 110 aa7.46□□□□□ -1.22
VPS4B-204ENST00000589604 PPBPP02775 128 aa7.46□□□□□ -1.22
VPS4B-204ENST00000589604 ESDP10768 282 aa7.46□□□□□ -1.22
VPS4B-204ENST00000589604 CKS2P33552 79 aa7.46□□□□□ -1.22
VPS4B-204ENST00000589604 RRN3P1Q2M238 152 aa7.46□□□□□ -1.22
VPS4B-204ENST00000589604 SMIM15Q7Z3B0 74 aa7.46□□□□□ -1.22
VPS4B-204ENST00000589604 C16orf74Q96GX8 76 aa7.46□□□□□ -1.22
VPS4B-204ENST00000589604 MRPL16Q9NX20 251 aaKnown RBP7.46□□□□□ -1.22
VPS4B-204ENST00000589604 FAM229AH3BQW9 127 aa7.45□□□□□ -1.22
VPS4B-204ENST00000589604 CFAP126Q5VTH2 177 aa7.45□□□□□ -1.22
VPS4B-204ENST00000589604 MRAP2Q96G30 205 aa7.45□□□□□ -1.22
VPS4B-204ENST00000589604 TP53TG1Q9Y2A0 90 aa7.45□□□□□ -1.22
VPS4B-204ENST00000589604 CSMD3Q7Z407 3707 aa7.45□□□□□ -1.22
VPS4B-204ENST00000589604 RS1O15537 224 aa7.44□□□□□ -1.22
VPS4B-204ENST00000589604 GYPEP15421 78 aa7.44□□□□□ -1.22
VPS4B-204ENST00000589604 Q6ZTI0 123 aa7.44□□□□□ -1.22
VPS4B-204ENST00000589604 NIT1Q86X76 327 aa7.44□□□□□ -1.22
VPS4B-204ENST00000589604 BAGE3Q86Y29 109 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms