RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 Q9H3A6 140 aa2.4□□□□□ -2.02
ZNF540-207ENST00000589285 XCL2Q9UBD3 114 aa2.4□□□□□ -2.02
ZNF540-207ENST00000589285 CSDC2Q9Y534 153 aaKnown RBP2.4□□□□□ -2.02
ZNF540-207ENST00000589285 MEGF8Q7Z7M0 2845 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 A0A1B0GUS0 222 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 GRIFINA4D1Z8 144 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 RBFOX3A6NFN3 312 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 FAM223BA6NKX1 122 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 ISLRO14498 428 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 TRGC2P03986 189 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 CSN3P07498 182 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 ESDP10768 282 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 PSMB3P49720 205 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 REG3GQ6UW15 175 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 ADAMTSL5Q6ZMM2 481 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 GTF2H5Q6ZYL4 71 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 FAM223AQ8IWN6 122 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 DEFB125Q8N687 156 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 TRGV9Q99603 122 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 SMIM7Q9BQ49 75 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 MAP1LC3CQ9BXW4 147 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 CSMD3Q7Z407 3707 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 COL7A1Q02388 2944 aa2.4□□□□□ -2.03
ZNF540-207ENST00000589285 CHEK1O14757 476 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 TAS2R45P59539 299 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 UBE2G1P62253 170 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 SERF2P84101 59 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 MEF2BQ02080 365 aaPredicted RBP2.39□□□□□ -2.03
ZNF540-207ENST00000589285 SOHLH1Q5JUK2 328 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 USMG5Q96IX5 58 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 FAM167A-AS1Q96KT0 104 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 C20orf144Q9BQM9 153 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 RNASE7Q9H1E1 156 aaKnown RBP2.39□□□□□ -2.03
ZNF540-207ENST00000589285 SLC35B3Q9H1N7 401 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 MS4A6AQ9H2W1 248 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 VAX2Q9UIW0 290 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 HSPB8Q9UJY1 196 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 KLK9Q9UKQ9 250 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 SMAD5-AS1Q9Y6J3 95 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 IGHV7-4-1A0A0J9YVY3 117 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 F5H768 121 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 GALR1P47211 349 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 PAFAH1B2P68402 229 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 VN1R17PQ8TDU5 208 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 FXYD5Q96DB9 178 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 SHANK2-AS3Q9BTD1 123 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 PPDPFQ9H3Y8 114 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 SMDT1Q9H4I9 107 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 TRBV20OR9-2A0A075B6H5 130 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 TRAV12-3A0A0B4J271 114 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 SMIM9A6NGZ8 99 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 MPDU1O75352 247 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 CXorf1O96002 111 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 IFNA1P01562 189 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 BCL2P10415 239 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 RPL7P18124 248 aaKnown RBP2.39□□□□□ -2.03
ZNF540-207ENST00000589285 PVRIGQ6DKI7 326 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 C4orf3Q8WVX3 66 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 PSMG3Q9BT73 122 aaPredicted RBP2.39□□□□□ -2.03
ZNF540-207ENST00000589285 PARLQ9H300 379 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 NRN1Q9NPD7 142 aa2.39□□□□□ -2.03
ZNF540-207ENST00000589285 MRPL27Q9P0M9 148 aaKnown RBP2.39□□□□□ -2.03
ZNF540-207ENST00000589285 H3BRN7 92 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 NDUFA4O00483 81 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 RS1O15537 224 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 ORM1P02763 201 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 GP9P14770 177 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 RNASE4P34096 147 aaKnown RBP2.38□□□□□ -2.03
ZNF540-207ENST00000589285 YPEL3P61236 119 aaPredicted RBP2.38□□□□□ -2.03
ZNF540-207ENST00000589285 LCN12Q6JVE5 192 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 TMEM86BQ8N661 226 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 ZNF414Q96IQ9 312 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 RETNQ9HD89 108 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 TRBV19A0A075B6N1 114 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 TRBV24-1A0A075B6N3 115 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 IGHV3-73A0A0B4J1V6 119 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 NDUFAF8A1L188 74 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 TYMSP04818 313 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 CNN1P51911 297 aaKnown RBP2.38□□□□□ -2.03
ZNF540-207ENST00000589285 KLF5Q13887 457 aaPredicted RBP2.38□□□□□ -2.03
ZNF540-207ENST00000589285 DEFB135Q30KP9 77 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 CENPWQ5EE01 88 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 TEX43Q6ZNM6 134 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 BAGE2Q86Y30 109 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 GPHB5Q86YW7 130 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 FER1L6-AS1Q8NA97 138 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 TMEM242Q9NWH2 141 aa2.38□□□□□ -2.03
ZNF540-207ENST00000589285 MRPL16Q9NX20 251 aaKnown RBP2.38□□□□□ -2.03
ZNF540-207ENST00000589285 IGKV3D-20A0A0C4DH25 116 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 A0A0U1RRA0 63 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 WI2-2373I1.2A0A1W2PRP0 233 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 C9JCJ5 164 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 IGHV3-53P01767 116 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 GPX1P07203 203 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 HIST1H1EP10412 219 aaKnown RBP2.37□□□□□ -2.03
ZNF540-207ENST00000589285 HTN3P15516 51 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 CSN1S1P47710 185 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 GNG4P50150 75 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 DEFB114Q30KQ6 69 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms