RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 LINC00467Q9BRT7 94 aa14.39□□□□□ -0.11
ATG4D-208ENST00000588667 SCRT2Q9NQ03 307 aa14.39□□□□□ -0.11
ATG4D-208ENST00000588667 DKK2Q9UBU2 259 aa14.39□□□□□ -0.11
ATG4D-208ENST00000588667 PLAC8L1A1L4L8 177 aa14.38□□□□□ -0.11
ATG4D-208ENST00000588667 CBY3A6NI87 242 aa14.38□□□□□ -0.11
ATG4D-208ENST00000588667 FAM222AQ5U5X8 452 aa14.38□□□□□ -0.11
ATG4D-208ENST00000588667 TENM2Q9NT68 2774 aa14.38□□□□□ -0.11
ATG4D-208ENST00000588667 IGHV3-16A0A0C4DH30 117 aa14.37□□□□□ -0.11
ATG4D-208ENST00000588667 TP53TG3Q9ULZ0 132 aa14.37□□□□□ -0.11
ATG4D-208ENST00000588667 NUPR2A6NF83 97 aa14.37□□□□□ -0.11
ATG4D-208ENST00000588667 SMIM15Q7Z3B0 74 aa14.37□□□□□ -0.11
ATG4D-208ENST00000588667 PHLDA1Q8WV24 401 aaPredicted RBP14.37□□□□□ -0.11
ATG4D-208ENST00000588667 TMEM191AQ9H0A3 160 aa14.37□□□□□ -0.11
ATG4D-208ENST00000588667 LYRM9A8MSI8 78 aa14.36□□□□□ -0.11
ATG4D-208ENST00000588667 C12orf74Q32Q52 190 aa14.36□□□□□ -0.11
ATG4D-208ENST00000588667 KIAA1644Q3SXP7 199 aa14.36□□□□□ -0.11
ATG4D-208ENST00000588667 MSRB1Q9NZV6 116 aa14.36□□□□□ -0.11
ATG4D-208ENST00000588667 NDUFA6P56556 154 aa14.35□□□□□ -0.11
ATG4D-208ENST00000588667 Q6ZTC4 211 aa14.35□□□□□ -0.11
ATG4D-208ENST00000588667 C9orf85Q96MD7 179 aa14.35□□□□□ -0.11
ATG4D-208ENST00000588667 M0R381 172 aa14.34□□□□□ -0.11
ATG4D-208ENST00000588667 CEMP1Q6PRD7 247 aaPredicted RBP14.34□□□□□ -0.11
ATG4D-208ENST00000588667 MDFICQ9P1T7 246 aa14.34□□□□□ -0.11
ATG4D-208ENST00000588667 FAM104BQ5XKR9 115 aa14.33□□□□□ -0.11
ATG4D-208ENST00000588667 DYNC2H1Q8NCM8 4307 aaKnown RBP14.33□□□□□ -0.12
ATG4D-208ENST00000588667 NXPH4O95158 308 aa14.33□□□□□ -0.12
ATG4D-208ENST00000588667 SRIP30626 198 aa14.33□□□□□ -0.12
ATG4D-208ENST00000588667 ZNF415Q09FC8 603 aa14.32□□□□□ -0.12
ATG4D-208ENST00000588667 DMRTA1Q5VZB9 504 aa14.32□□□□□ -0.12
ATG4D-208ENST00000588667 AMN1Q8IY45 258 aa14.32□□□□□ -0.12
ATG4D-208ENST00000588667 SYT8Q8NBV8 401 aa14.32□□□□□ -0.12
ATG4D-208ENST00000588667 KLK5Q9Y337 293 aaPredicted RBP14.32□□□□□ -0.12
ATG4D-208ENST00000588667 TRAV10A0A0B4J240 114 aa14.31□□□□□ -0.12
ATG4D-208ENST00000588667 C5orf52A6NGY3 159 aa14.31□□□□□ -0.12
ATG4D-208ENST00000588667 DAD1P61803 113 aa14.31□□□□□ -0.12
ATG4D-208ENST00000588667 SNRPEP62304 92 aaKnown RBP14.31□□□□□ -0.12
ATG4D-208ENST00000588667 C11orf72Q8NBR9 251 aa14.31□□□□□ -0.12
ATG4D-208ENST00000588667 NOP10Q9NPE3 64 aaKnown RBP14.31□□□□□ -0.12
ATG4D-208ENST00000588667 AP1S3Q96PC3 154 aa14.3□□□□□ -0.12
ATG4D-208ENST00000588667 ALKBH7Q9BT30 221 aaPredicted RBP14.3□□□□□ -0.12
ATG4D-208ENST00000588667 EVI2AP22794 236 aa14.3□□□□□ -0.12
ATG4D-208ENST00000588667 Q0VG73 95 aa14.3□□□□□ -0.12
ATG4D-208ENST00000588667 DAZ2Q13117 558 aaKnown RBP14.3□□□□□ -0.12
ATG4D-208ENST00000588667 OR10J3Q5JRS4 329 aa14.3□□□□□ -0.12
ATG4D-208ENST00000588667 COA6Q5JTJ3 125 aaKnown RBP14.3□□□□□ -0.12
ATG4D-208ENST00000588667 GSN-AS1Q9NRJ2 163 aa14.3□□□□□ -0.12
ATG4D-208ENST00000588667 DEFB130BP0DP73 79 aa14.28□□□□□ -0.12
ATG4D-208ENST00000588667 DEFB130AP0DP74 79 aa14.28□□□□□ -0.12
ATG4D-208ENST00000588667 DEFB131BA0A096LNP1 70 aa14.27□□□□□ -0.12
ATG4D-208ENST00000588667 RAB4AP20338 218 aa14.27□□□□□ -0.12
ATG4D-208ENST00000588667 MRPL51Q4U2R6 128 aaKnown RBP14.27□□□□□ -0.12
ATG4D-208ENST00000588667 ORMDL3Q8N138 153 aa14.27□□□□□ -0.12
ATG4D-208ENST00000588667 RNF185Q96GF1 192 aa14.27□□□□□ -0.12
ATG4D-208ENST00000588667 SPXQ9BT56 116 aa14.27□□□□□ -0.12
ATG4D-208ENST00000588667 DPH3P1Q9H4G8 78 aa14.27□□□□□ -0.12
ATG4D-208ENST00000588667 PLECQ15149 4684 aaKnown RBP14.27□□□□□ -0.13
ATG4D-208ENST00000588667 PPBPP02775 128 aa14.26□□□□□ -0.13
ATG4D-208ENST00000588667 HOXA5P20719 270 aa14.26□□□□□ -0.13
ATG4D-208ENST00000588667 BAGE3Q86Y29 109 aa14.26□□□□□ -0.13
ATG4D-208ENST00000588667 LINC00612Q8N6U2 182 aa14.26□□□□□ -0.13
ATG4D-208ENST00000588667 LOC105371267A0A1B0GV96 52 aa14.26□□□□□ -0.13
ATG4D-208ENST00000588667 D6R8Y8 96 aa14.26□□□□□ -0.13
ATG4D-208ENST00000588667 SMIM17P0DL12 118 aa14.26□□□□□ -0.13
ATG4D-208ENST00000588667 CKS2P33552 79 aa14.26□□□□□ -0.13
ATG4D-208ENST00000588667 ZNF876PQ49A33 203 aa14.26□□□□□ -0.13
ATG4D-208ENST00000588667 C14orf178Q8N769 122 aaPredicted RBP14.26□□□□□ -0.13
ATG4D-208ENST00000588667 C18orf32Q8TCD1 76 aa14.26□□□□□ -0.13
ATG4D-208ENST00000588667 PTH2Q96A98 100 aa14.26□□□□□ -0.13
ATG4D-208ENST00000588667 KMT2CQ8NEZ4 4911 aaKnown RBP14.25□□□□□ -0.13
ATG4D-208ENST00000588667 M0R2P5 195 aa14.25□□□□□ -0.13
ATG4D-208ENST00000588667 PIK3CD-AS1Q5SR53 167 aa14.25□□□□□ -0.13
ATG4D-208ENST00000588667 Q6ZTI0 123 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 MRAP2Q96G30 205 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 PRELID3AQ96N28 172 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 MUC4Q99102 2169 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 GAGE12BA1L429 117 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 GAGE7O76087 117 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 GAGE12FP0CL80 117 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 GAGE12GP0CL81 117 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 GAGE12IP0CL82 117 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 HTN3P15516 51 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 TCTAP57738 103 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 LAMTOR2Q9Y2Q5 125 aa14.23□□□□□ -0.13
ATG4D-208ENST00000588667 TRGV1A0A0A0MS02 117 aa14.22□□□□□ -0.13
ATG4D-208ENST00000588667 IGLL5B9A064 214 aa14.22□□□□□ -0.13
ATG4D-208ENST00000588667 ATP5G1P05496 136 aa14.22□□□□□ -0.13
ATG4D-208ENST00000588667 LGALS9BQ3B8N2 356 aa14.22□□□□□ -0.13
ATG4D-208ENST00000588667 LYSTQ99698 3801 aa14.22□□□□□ -0.13
ATG4D-208ENST00000588667 NDUFAF3Q9BU61 184 aa14.22□□□□□ -0.13
ATG4D-208ENST00000588667 MGPP08493 103 aa14.21□□□□□ -0.13
ATG4D-208ENST00000588667 S100A2P29034 98 aa14.21□□□□□ -0.13
ATG4D-208ENST00000588667 IQCJQ1A5X6 159 aa14.21□□□□□ -0.13
ATG4D-208ENST00000588667 HIST3H2BBQ8N257 126 aa14.21□□□□□ -0.13
ATG4D-208ENST00000588667 KIF25-AS1Q9Y6Z4 181 aa14.21□□□□□ -0.13
ATG4D-208ENST00000588667 SERF1AO75920 110 aa14.2□□□□□ -0.14
ATG4D-208ENST00000588667 NCR2O95944 276 aa14.2□□□□□ -0.14
ATG4D-208ENST00000588667 C18orf15Q96N68 181 aa14.2□□□□□ -0.14
ATG4D-208ENST00000588667 A8MWV9 139 aa14.19□□□□□ -0.14
ATG4D-208ENST00000588667 SMKR1H3BMG3 65 aa14.19□□□□□ -0.14
ATG4D-208ENST00000588667 POM121L12Q8N7R1 296 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms