RNA–Protein interactions for RNA: ENST00000584541.1

RFFL-211, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-211ENST00000584541 ATP5L2Q7Z4Y8 100 aa12.98□□□□□ -0.33
RFFL-211ENST00000584541 URGCP-MRPS24S4R325 110 aa12.98□□□□□ -0.33
RFFL-211ENST00000584541 NACAE9PAV3 2078 aa12.98□□□□□ -0.33
RFFL-211ENST00000584541 HTN3P15516 51 aa12.97□□□□□ -0.33
RFFL-211ENST00000584541 FAM74A4Q5TZK3 123 aa12.97□□□□□ -0.33
RFFL-211ENST00000584541 C14orf178Q8N769 122 aaPredicted RBP12.97□□□□□ -0.33
RFFL-211ENST00000584541 JPT2Q9H910 190 aa12.97□□□□□ -0.33
RFFL-211ENST00000584541 A0A087WWL8 130 aa12.96□□□□□ -0.33
RFFL-211ENST00000584541 TRGV4A0A0C4DH28 118 aa12.96□□□□□ -0.33
RFFL-211ENST00000584541 HBBP68871 147 aa12.96□□□□□ -0.33
RFFL-211ENST00000584541 ZFP2Q6ZN57 461 aa12.96□□□□□ -0.33
RFFL-211ENST00000584541 POM121L12Q8N7R1 296 aa12.96□□□□□ -0.33
RFFL-211ENST00000584541 ZNF479Q96JC4 524 aa12.96□□□□□ -0.33
RFFL-211ENST00000584541 DPH3P1Q9H4G8 78 aa12.96□□□□□ -0.33
RFFL-211ENST00000584541 SMCO4Q9NRQ5 59 aa12.96□□□□□ -0.33
RFFL-211ENST00000584541 TRAV10A0A0B4J240 114 aa12.95□□□□□ -0.34
RFFL-211ENST00000584541 F5H768 121 aa12.95□□□□□ -0.34
RFFL-211ENST00000584541 EVI2AP22794 236 aa12.95□□□□□ -0.34
RFFL-211ENST00000584541 CAMPP49913 170 aa12.95□□□□□ -0.34
RFFL-211ENST00000584541 SAMD10Q9BYL1 202 aa12.95□□□□□ -0.34
RFFL-211ENST00000584541 DEFB131BA0A096LNP1 70 aa12.94□□□□□ -0.34
RFFL-211ENST00000584541 IGHV3-73A0A0B4J1V6 119 aa12.94□□□□□ -0.34
RFFL-211ENST00000584541 CRYGDP07320 174 aa12.94□□□□□ -0.34
RFFL-211ENST00000584541 A0A1B0GXF2 115 aa12.93□□□□□ -0.34
RFFL-211ENST00000584541 MGPP08493 103 aa12.93□□□□□ -0.34
RFFL-211ENST00000584541 SLAQ13239 276 aa12.93□□□□□ -0.34
RFFL-211ENST00000584541 ZNF56Q15929 161 aa12.93□□□□□ -0.34
RFFL-211ENST00000584541 RASL11AQ6T310 242 aa12.93□□□□□ -0.34
RFFL-211ENST00000584541 WWC2-AS2Q96NR7 200 aa12.93□□□□□ -0.34
RFFL-211ENST00000584541 TMEM191AQ9H0A3 160 aa12.93□□□□□ -0.34
RFFL-211ENST00000584541 F5H697 171 aa12.92□□□□□ -0.34
RFFL-211ENST00000584541 FHL2Q14192 279 aa12.92□□□□□ -0.34
RFFL-211ENST00000584541 ELOBQ15370 118 aa12.92□□□□□ -0.34
RFFL-211ENST00000584541 UFSP1Q6NVU6 142 aa12.92□□□□□ -0.34
RFFL-211ENST00000584541 TMEM88Q6PEY1 159 aa12.92□□□□□ -0.34
RFFL-211ENST00000584541 PHLDA1Q8WV24 401 aaPredicted RBP12.92□□□□□ -0.34
RFFL-211ENST00000584541 KIF25-AS1Q9Y6Z4 181 aa12.92□□□□□ -0.34
RFFL-211ENST00000584541 HOXA5P20719 270 aa12.91□□□□□ -0.34
RFFL-211ENST00000584541 RAB4BP61018 213 aa12.91□□□□□ -0.34
RFFL-211ENST00000584541 CBLN2Q8IUK8 224 aa12.91□□□□□ -0.34
RFFL-211ENST00000584541 PRO0255Q9UI72 69 aa12.91□□□□□ -0.34
RFFL-211ENST00000584541 HHLA3Q9XRX5 114 aa12.91□□□□□ -0.34
RFFL-211ENST00000584541 COX19Q49B96 90 aa12.9□□□□□ -0.34
RFFL-211ENST00000584541 TRBV24-1A0A075B6N3 115 aa12.89□□□□□ -0.35
RFFL-211ENST00000584541 GATA1P15976 413 aaPredicted RBP12.89□□□□□ -0.35
RFFL-211ENST00000584541 GATD1Q8NB37 220 aa12.89□□□□□ -0.35
RFFL-211ENST00000584541 TGIF2-C20orf24A0A0A6YYL0 155 aa12.88□□□□□ -0.35
RFFL-211ENST00000584541 TRBV6-4A0A1B0GX49 114 aa12.88□□□□□ -0.35
RFFL-211ENST00000584541 NUPR2A6NF83 97 aa12.88□□□□□ -0.35
RFFL-211ENST00000584541 LINC00315P59091 139 aa12.88□□□□□ -0.35
RFFL-211ENST00000584541 PRADC1Q9BSG0 188 aa12.88□□□□□ -0.35
RFFL-211ENST00000584541 H7C1H1 209 aa12.87□□□□□ -0.35
RFFL-211ENST00000584541 PAX4O43316 350 aa12.87□□□□□ -0.35
RFFL-211ENST00000584541 CRYBA4P53673 196 aa12.87□□□□□ -0.35
RFFL-211ENST00000584541 RHOHQ15669 191 aa12.87□□□□□ -0.35
RFFL-211ENST00000584541 FAM104BQ5XKR9 115 aa12.87□□□□□ -0.35
RFFL-211ENST00000584541 AMN1Q8IY45 258 aa12.87□□□□□ -0.35
RFFL-211ENST00000584541 MUC7Q8TAX7 377 aa12.87□□□□□ -0.35
RFFL-211ENST00000584541 FRZBQ92765 325 aa12.87□□□□□ -0.35
RFFL-211ENST00000584541 FAM210BQ96KR6 192 aa12.87□□□□□ -0.35
RFFL-211ENST00000584541 TRAV26-1A0A087WT03 109 aa12.86□□□□□ -0.35
RFFL-211ENST00000584541 K7EQD1 137 aa12.86□□□□□ -0.35
RFFL-211ENST00000584541 SCO1O75880 301 aa12.86□□□□□ -0.35
RFFL-211ENST00000584541 RAB4AP20338 218 aa12.86□□□□□ -0.35
RFFL-211ENST00000584541 CEMP1Q6PRD7 247 aaPredicted RBP12.86□□□□□ -0.35
RFFL-211ENST00000584541 SLC25A29Q8N8R3 303 aa12.86□□□□□ -0.35
RFFL-211ENST00000584541 KLK5Q9Y337 293 aaPredicted RBP12.86□□□□□ -0.35
RFFL-211ENST00000584541 STAB2Q8WWQ8 2551 aa12.85□□□□□ -0.35
RFFL-211ENST00000584541 A0A0J9YY99 117 aa12.85□□□□□ -0.35
RFFL-211ENST00000584541 HLA-DQA1P01909 254 aa12.85□□□□□ -0.35
RFFL-211ENST00000584541 SUMO4Q6EEV6 95 aa12.85□□□□□ -0.35
RFFL-211ENST00000584541 Q6ZSN1 163 aa12.85□□□□□ -0.35
RFFL-211ENST00000584541 MRAP2Q96G30 205 aa12.85□□□□□ -0.35
RFFL-211ENST00000584541 RNF185Q96GF1 192 aa12.85□□□□□ -0.35
RFFL-211ENST00000584541 YPEL4Q96NS1 127 aa12.85□□□□□ -0.35
RFFL-211ENST00000584541 GNB1LQ9BYB4 327 aa12.85□□□□□ -0.35
RFFL-211ENST00000584541 H3BNG1 76 aa12.84□□□□□ -0.35
RFFL-211ENST00000584541 MT-ND6P03923 174 aa12.84□□□□□ -0.35
RFFL-211ENST00000584541 TMEM136Q6ZRR5 245 aa12.84□□□□□ -0.35
RFFL-211ENST00000584541 TRBV10-1A0A0K0K1A3 114 aa12.83□□□□□ -0.36
RFFL-211ENST00000584541 IGLL5B9A064 214 aa12.83□□□□□ -0.36
RFFL-211ENST00000584541 M0QY20 66 aa12.82□□□□□ -0.36
RFFL-211ENST00000584541 GYPEP15421 78 aa12.82□□□□□ -0.36
RFFL-211ENST00000584541 MRPL51Q4U2R6 128 aaKnown RBP12.82□□□□□ -0.36
RFFL-211ENST00000584541 C15orf53Q8NAA6 179 aa12.82□□□□□ -0.36
RFFL-211ENST00000584541 VSIG2Q96IQ7 327 aa12.82□□□□□ -0.36
RFFL-211ENST00000584541 TRAV26-2A0A0B4J265 109 aa12.81□□□□□ -0.36
RFFL-211ENST00000584541 APCSP02743 223 aa12.81□□□□□ -0.36
RFFL-211ENST00000584541 CKS2P33552 79 aa12.81□□□□□ -0.36
RFFL-211ENST00000584541 RPL36AP83881 106 aaKnown RBP12.81□□□□□ -0.36
RFFL-211ENST00000584541 ZFAND6Q6FIF0 208 aa12.81□□□□□ -0.36
RFFL-211ENST00000584541 RPL36ALQ969Q0 106 aaKnown RBP12.81□□□□□ -0.36
RFFL-211ENST00000584541 ICOSQ9Y6W8 199 aa12.81□□□□□ -0.36
RFFL-211ENST00000584541 PPP1R17O96001 155 aa12.8□□□□□ -0.36
RFFL-211ENST00000584541 PPBPP02775 128 aa12.8□□□□□ -0.36
RFFL-211ENST00000584541 MRPL23Q16540 153 aaKnown RBP12.8□□□□□ -0.36
RFFL-211ENST00000584541 DNAJC30Q96LL9 226 aa12.8□□□□□ -0.36
RFFL-211ENST00000584541 MRPL18Q9H0U6 180 aaKnown RBP12.8□□□□□ -0.36
RFFL-211ENST00000584541 NIT2Q9NQR4 276 aa12.8□□□□□ -0.36
RFFL-211ENST00000584541 TRAPPC1Q9Y5R8 145 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms