RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TP53TG1Q9Y2A0 90 aa17.91■□□□□ 0.46
SHMT1-207ENST00000580002 TRAV26-2A0A0B4J265 109 aa17.91■□□□□ 0.46
SHMT1-207ENST00000580002 FAM74A4Q5TZK3 123 aa17.91■□□□□ 0.46
SHMT1-207ENST00000580002 CELA1Q9UNI1 258 aa17.91■□□□□ 0.46
SHMT1-207ENST00000580002 S100A8P05109 93 aa17.9■□□□□ 0.46
SHMT1-207ENST00000580002 MIFP14174 115 aa17.9■□□□□ 0.46
SHMT1-207ENST00000580002 DEFA6Q01524 100 aa17.9■□□□□ 0.46
SHMT1-207ENST00000580002 MRPL51Q4U2R6 128 aaKnown RBP17.9■□□□□ 0.46
SHMT1-207ENST00000580002 PTH2Q96A98 100 aa17.9■□□□□ 0.46
SHMT1-207ENST00000580002 AP1S3Q96PC3 154 aa17.9■□□□□ 0.46
SHMT1-207ENST00000580002 PRKDCP78527 4128 aaKnown RBP17.9■□□□□ 0.46
SHMT1-207ENST00000580002 TRGC1P0CF51 173 aa17.89■□□□□ 0.45
SHMT1-207ENST00000580002 GATA1P15976 413 aaPredicted RBP17.89■□□□□ 0.45
SHMT1-207ENST00000580002 COX19Q49B96 90 aa17.89■□□□□ 0.45
SHMT1-207ENST00000580002 CFAP126Q5VTH2 177 aa17.89■□□□□ 0.45
SHMT1-207ENST00000580002 TM2D3Q9BRN9 247 aa17.89■□□□□ 0.45
SHMT1-207ENST00000580002 TMA7Q9Y2S6 64 aaKnown RBP17.89■□□□□ 0.45
SHMT1-207ENST00000580002 NCR2O95944 276 aa17.89■□□□□ 0.45
SHMT1-207ENST00000580002 IGHV3-53P01767 116 aa17.89■□□□□ 0.45
SHMT1-207ENST00000580002 MT-ND6P03923 174 aa17.89■□□□□ 0.45
SHMT1-207ENST00000580002 MGPP08493 103 aa17.89■□□□□ 0.45
SHMT1-207ENST00000580002 FAM222AQ5U5X8 452 aa17.89■□□□□ 0.45
SHMT1-207ENST00000580002 NACAE9PAV3 2078 aa17.88■□□□□ 0.45
SHMT1-207ENST00000580002 DEFB130BP0DP73 79 aa17.88■□□□□ 0.45
SHMT1-207ENST00000580002 DEFB130AP0DP74 79 aa17.88■□□□□ 0.45
SHMT1-207ENST00000580002 DPH3P1Q9H4G8 78 aa17.88■□□□□ 0.45
SHMT1-207ENST00000580002 UFSP1Q6NVU6 142 aa17.87■□□□□ 0.45
SHMT1-207ENST00000580002 Q6ZSN1 163 aa17.87■□□□□ 0.45
SHMT1-207ENST00000580002 SMIM15Q7Z3B0 74 aa17.86■□□□□ 0.45
SHMT1-207ENST00000580002 ZNF479Q96JC4 524 aa17.86■□□□□ 0.45
SHMT1-207ENST00000580002 RS1O15537 224 aa17.86■□□□□ 0.45
SHMT1-207ENST00000580002 LGALS9BQ3B8N2 356 aa17.86■□□□□ 0.45
SHMT1-207ENST00000580002 DKK2Q9UBU2 259 aa17.86■□□□□ 0.45
SHMT1-207ENST00000580002 D6R8Y8 96 aa17.85■□□□□ 0.45
SHMT1-207ENST00000580002 C1orf196B1AJZ1 125 aa17.84■□□□□ 0.45
SHMT1-207ENST00000580002 SMIM17P0DL12 118 aa17.84■□□□□ 0.45
SHMT1-207ENST00000580002 SRIP30626 198 aa17.84■□□□□ 0.45
SHMT1-207ENST00000580002 SPATA25Q9BR10 227 aa17.84■□□□□ 0.45
SHMT1-207ENST00000580002 TRGV2A0A075B6R0 118 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 A8MWV9 139 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 HIST1H2BKO60814 126 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 HIST1H2BJP06899 126 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 HIST1H2BOP23527 126 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 HIST1H2BBP33778 126 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 HIST1H2BDP58876 126 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 HIST1H2BCP62807 126 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 HIST2H2BEQ16778 126 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.83■□□□□ 0.44
SHMT1-207ENST00000580002 PIK3CD-AS1Q5SR53 167 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 LINC00612Q8N6U2 182 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 HIST1H2BHQ93079 126 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 HIST1H2BNQ99877 126 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 HIST1H2BMQ99879 126 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 ALKBH7Q9BT30 221 aaPredicted RBP17.83■□□□□ 0.44
SHMT1-207ENST00000580002 Q9UF83 564 aa17.83■□□□□ 0.44
SHMT1-207ENST00000580002 F5H697 171 aa17.82■□□□□ 0.44
SHMT1-207ENST00000580002 OR4C5Q8NGB2 326 aa17.82■□□□□ 0.44
SHMT1-207ENST00000580002 COL7A1Q02388 2944 aa17.82■□□□□ 0.44
SHMT1-207ENST00000580002 SUMO4Q6EEV6 95 aa17.81■□□□□ 0.44
SHMT1-207ENST00000580002 A0A0J9YWU9 116 aa17.81■□□□□ 0.44
SHMT1-207ENST00000580002 CKS2P33552 79 aa17.81■□□□□ 0.44
SHMT1-207ENST00000580002 ZNF56Q15929 161 aa17.81■□□□□ 0.44
SHMT1-207ENST00000580002 IQCJQ1A5X6 159 aa17.81■□□□□ 0.44
SHMT1-207ENST00000580002 U3KQK5 164 aa17.81■□□□□ 0.44
SHMT1-207ENST00000580002 P0DMU3 169 aa17.8■□□□□ 0.44
SHMT1-207ENST00000580002 FAM231AP0DMU4 169 aa17.8■□□□□ 0.44
SHMT1-207ENST00000580002 FAM231CP0DMU5 169 aa17.8■□□□□ 0.44
SHMT1-207ENST00000580002 RPL39LQ96EH5 51 aaKnown RBP17.8■□□□□ 0.44
SHMT1-207ENST00000580002 B9D2Q9BPU9 175 aa17.79■□□□□ 0.44
SHMT1-207ENST00000580002 TRAV4A0A0B4J268 109 aa17.79■□□□□ 0.44
SHMT1-207ENST00000580002 LYRM9A8MSI8 78 aa17.79■□□□□ 0.44
SHMT1-207ENST00000580002 NPYP01303 97 aa17.79■□□□□ 0.44
SHMT1-207ENST00000580002 PRELID3AQ96N28 172 aa17.78■□□□□ 0.44
SHMT1-207ENST00000580002 ORMDL3Q8N138 153 aa17.76■□□□□ 0.43
SHMT1-207ENST00000580002 NRACQ8N912 160 aa17.76■□□□□ 0.43
SHMT1-207ENST00000580002 SPART-AS1P0CW21 52 aa17.76■□□□□ 0.43
SHMT1-207ENST00000580002 NDUFAF3Q9BU61 184 aa17.76■□□□□ 0.43
SHMT1-207ENST00000580002 M0QY20 66 aa17.75■□□□□ 0.43
SHMT1-207ENST00000580002 RAB5BP61020 215 aa17.75■□□□□ 0.43
SHMT1-207ENST00000580002 DAD1P61803 113 aa17.74■□□□□ 0.43
SHMT1-207ENST00000580002 FHL2Q14192 279 aa17.74■□□□□ 0.43
SHMT1-207ENST00000580002 C12orf74Q32Q52 190 aa17.74■□□□□ 0.43
SHMT1-207ENST00000580002 C18orf32Q8TCD1 76 aa17.74■□□□□ 0.43
SHMT1-207ENST00000580002 MRAP2Q96G30 205 aa17.74■□□□□ 0.43
SHMT1-207ENST00000580002 TNFRSF6BO95407 300 aa17.74■□□□□ 0.43
SHMT1-207ENST00000580002 HOXA5P20719 270 aa17.74■□□□□ 0.43
SHMT1-207ENST00000580002 C11orf68Q9H3H3 251 aaKnown RBP17.74■□□□□ 0.43
SHMT1-207ENST00000580002 ZMAT4Q9H898 229 aa17.74■□□□□ 0.43
SHMT1-207ENST00000580002 LOC389332A0A1B0GUA5 103 aa17.73■□□□□ 0.43
SHMT1-207ENST00000580002 ZFP2Q6ZN57 461 aa17.73■□□□□ 0.43
SHMT1-207ENST00000580002 NDUFA6P56556 154 aa17.72■□□□□ 0.43
SHMT1-207ENST00000580002 DEFB104AQ8WTQ1 72 aa17.72■□□□□ 0.43
SHMT1-207ENST00000580002 RHODO00212 210 aa17.71■□□□□ 0.43
SHMT1-207ENST00000580002 C18orf15Q96N68 181 aa17.71■□□□□ 0.43
SHMT1-207ENST00000580002 NUPR1O60356 82 aa17.71■□□□□ 0.43
SHMT1-207ENST00000580002 PPBPP02775 128 aa17.7■□□□□ 0.42
SHMT1-207ENST00000580002 SLC25A29Q8N8R3 303 aa17.7■□□□□ 0.42
SHMT1-207ENST00000580002 URB1-AS1Q96HZ7 61 aa17.7■□□□□ 0.42
SHMT1-207ENST00000580002 TRGV4A0A0C4DH28 118 aa17.69■□□□□ 0.42
SHMT1-207ENST00000580002 LINC00310P59036 64 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms