RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 UFSP1Q6NVU6 142 aa9.34□□□□□ -0.91
CIITA-210ENST00000575513 ZFP82Q8N141 532 aa9.34□□□□□ -0.91
CIITA-210ENST00000575513 OR2D3Q8NGH3 330 aa9.34□□□□□ -0.91
CIITA-210ENST00000575513 FAT2Q9NYQ8 4349 aa9.33□□□□□ -0.92
CIITA-210ENST00000575513 XKRY2A2RUG3 117 aa9.33□□□□□ -0.92
CIITA-210ENST00000575513 RHODO00212 210 aa9.33□□□□□ -0.92
CIITA-210ENST00000575513 NXPH4O95158 308 aa9.33□□□□□ -0.92
CIITA-210ENST00000575513 OR5AL1P0C617 328 aa9.33□□□□□ -0.92
CIITA-210ENST00000575513 FAM231DQ6ZW35 169 aa9.33□□□□□ -0.92
CIITA-210ENST00000575513 NUDT10Q8NFP7 164 aa9.33□□□□□ -0.92
CIITA-210ENST00000575513 NUDT11Q96G61 164 aa9.33□□□□□ -0.92
CIITA-210ENST00000575513 SFRP2Q96HF1 295 aa9.33□□□□□ -0.92
CIITA-210ENST00000575513 K7EP13 123 aa9.32□□□□□ -0.92
CIITA-210ENST00000575513 SIVA1O15304 175 aa9.32□□□□□ -0.92
CIITA-210ENST00000575513 TMEM241Q24JQ0 296 aa9.32□□□□□ -0.92
CIITA-210ENST00000575513 LINC01551Q86U37 167 aa9.32□□□□□ -0.92
CIITA-210ENST00000575513 HECTD4Q9Y4D8 3996 aa9.31□□□□□ -0.92
CIITA-210ENST00000575513 IGHV3-73A0A0B4J1V6 119 aa9.31□□□□□ -0.92
CIITA-210ENST00000575513 IGLC6P0CF74 106 aa9.31□□□□□ -0.92
CIITA-210ENST00000575513 C6orf223Q8N319 242 aa9.31□□□□□ -0.92
CIITA-210ENST00000575513 RNASE7Q9H1E1 156 aaKnown RBP9.31□□□□□ -0.92
CIITA-210ENST00000575513 RPP21Q9H633 154 aaKnown RBP9.31□□□□□ -0.92
CIITA-210ENST00000575513 BIRC6Q9NR09 4857 aa9.3□□□□□ -0.92
CIITA-210ENST00000575513 LOC100131303A0A0U1RQF7 123 aa9.3□□□□□ -0.92
CIITA-210ENST00000575513 PRSS29PA6NIE9 313 aa9.3□□□□□ -0.92
CIITA-210ENST00000575513 M0R381 172 aa9.3□□□□□ -0.92
CIITA-210ENST00000575513 CRYGDP07320 174 aa9.3□□□□□ -0.92
CIITA-210ENST00000575513 FER1L6-AS1Q8NA97 138 aa9.3□□□□□ -0.92
CIITA-210ENST00000575513 OR10AG1Q8NH19 301 aa9.3□□□□□ -0.92
CIITA-210ENST00000575513 SAMD10Q9BYL1 202 aa9.3□□□□□ -0.92
CIITA-210ENST00000575513 JPT2Q9H910 190 aa9.3□□□□□ -0.92
CIITA-210ENST00000575513 OSTCQ9NRP0 149 aa9.3□□□□□ -0.92
CIITA-210ENST00000575513 NAT8Q9UHE5 227 aa9.3□□□□□ -0.92
CIITA-210ENST00000575513 TRAV9-2A0A087WT02 112 aa9.29□□□□□ -0.92
CIITA-210ENST00000575513 F2Z2F3 143 aa9.29□□□□□ -0.92
CIITA-210ENST00000575513 GATCO43716 136 aaKnown RBP9.29□□□□□ -0.92
CIITA-210ENST00000575513 CT83Q5H943 113 aa9.29□□□□□ -0.92
CIITA-210ENST00000575513 Q6ZSN1 163 aa9.29□□□□□ -0.92
CIITA-210ENST00000575513 GZMBP10144 247 aa9.28□□□□□ -0.92
CIITA-210ENST00000575513 ERVFC1-1P60608 527 aa9.28□□□□□ -0.92
CIITA-210ENST00000575513 RPL23P62829 140 aaKnown RBP9.28□□□□□ -0.92
CIITA-210ENST00000575513 CACNG7P62955 275 aa9.28□□□□□ -0.92
CIITA-210ENST00000575513 WDR73Q6P4I2 378 aa9.28□□□□□ -0.92
CIITA-210ENST00000575513 UQCC3Q6UW78 93 aa9.28□□□□□ -0.92
CIITA-210ENST00000575513 ISOC2Q96AB3 205 aa9.28□□□□□ -0.92
CIITA-210ENST00000575513 TRBV10-1A0A0K0K1A3 114 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 A0A1B0GVY2 172 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 A8MWL6 223 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 DNAH10OSP0CZ25 163 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 LINC00694P0DN24 101 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 CTRLP40313 264 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 FAM74A4Q5TZK3 123 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 SPANXN1Q5VSR9 72 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 ATP6V0E2Q8NHE4 81 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 CNFNQ9BYD5 112 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 KRTAP1-5Q9BYS1 174 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 GTSF1LQ9H1H1 148 aa9.27□□□□□ -0.93
CIITA-210ENST00000575513 A0A087WWL8 130 aa9.26□□□□□ -0.93
CIITA-210ENST00000575513 FOXA3P55318 350 aaPredicted RBP9.26□□□□□ -0.93
CIITA-210ENST00000575513 RAB4BP61018 213 aa9.26□□□□□ -0.93
CIITA-210ENST00000575513 C15orf54Q8N8G6 183 aa9.26□□□□□ -0.93
CIITA-210ENST00000575513 TRAV8-6A0A0B4J262 113 aa9.25□□□□□ -0.93
CIITA-210ENST00000575513 LINC00862A6NCI5 91 aa9.25□□□□□ -0.93
CIITA-210ENST00000575513 FAM231BA6NCW3 169 aa9.25□□□□□ -0.93
CIITA-210ENST00000575513 EVI2AP22794 236 aa9.25□□□□□ -0.93
CIITA-210ENST00000575513 ADIRFQ15847 76 aa9.25□□□□□ -0.93
CIITA-210ENST00000575513 LELP1Q5T871 98 aa9.25□□□□□ -0.93
CIITA-210ENST00000575513 LYZL1Q6UWQ5 148 aa9.25□□□□□ -0.93
CIITA-210ENST00000575513 C14orf178Q8N769 122 aaPredicted RBP9.25□□□□□ -0.93
CIITA-210ENST00000575513 TPPP3Q9BW30 176 aa9.25□□□□□ -0.93
CIITA-210ENST00000575513 GFRA4Q9GZZ7 299 aa9.25□□□□□ -0.93
CIITA-210ENST00000575513 A0A087WWC5 75 aa9.24□□□□□ -0.93
CIITA-210ENST00000575513 MUC21A0A0G2JKD1 596 aa9.24□□□□□ -0.93
CIITA-210ENST00000575513 MUC21A0A140T8X8 626 aa9.24□□□□□ -0.93
CIITA-210ENST00000575513 WFDC10BQ8IUB3 73 aa9.24□□□□□ -0.93
CIITA-210ENST00000575513 C10orf126Q8N4M7 172 aa9.24□□□□□ -0.93
CIITA-210ENST00000575513 OR10G8Q8NGN5 311 aa9.24□□□□□ -0.93
CIITA-210ENST00000575513 TSKUQ8WUA8 353 aa9.24□□□□□ -0.93
CIITA-210ENST00000575513 GTSF1Q8WW33 167 aa9.24□□□□□ -0.93
CIITA-210ENST00000575513 AP1S3Q96PC3 154 aa9.24□□□□□ -0.93
CIITA-210ENST00000575513 V9GYV3 84 aa9.24□□□□□ -0.93
CIITA-210ENST00000575513 PKD1P98161 4303 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 IGHV3-38A0A0C4DH36 116 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 GAGE12JA6NER3 117 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 SMIM17P0DL12 118 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 PNRC1Q12796 327 aaPredicted RBP9.23□□□□□ -0.93
CIITA-210ENST00000575513 GAGE1Q13065 139 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 GAGE4Q13068 117 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 GAGE5Q13069 117 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 GAGE13Q4V321 117 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 LINC01556Q5JQF7 62 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 NFE4Q86UQ8 179 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 Q9UF83 564 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 KIF25-AS1Q9Y6Z4 181 aa9.23□□□□□ -0.93
CIITA-210ENST00000575513 TRBV7-3A0A075B6L6 115 aa9.22□□□□□ -0.93
CIITA-210ENST00000575513 TMEM218A2RU14 115 aa9.22□□□□□ -0.93
CIITA-210ENST00000575513 TRGC1P0CF51 173 aa9.22□□□□□ -0.93
CIITA-210ENST00000575513 NTF3P20783 257 aa9.22□□□□□ -0.93
CIITA-210ENST00000575513 LINC00315P59091 139 aa9.22□□□□□ -0.93
CIITA-210ENST00000575513 RPL36AP83881 106 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms