RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 CCDC179H3BU77 68 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 ERHP84090 104 aaKnown RBP5.02□□□□□ -1.61
VPS53-217ENST00000575100 AKR1C1Q04828 323 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 SLC38A11Q08AI6 406 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 EXOC3-AS1Q8N2X6 119 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 TTC9CQ8N5M4 171 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 ZNF471Q9BX82 626 aaPredicted RBP5.02□□□□□ -1.61
VPS53-217ENST00000575100 WNK1Q9H4A3 2382 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 IGLV11-55A0A075B6I3 123 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 IGLV4-3A0A075B6K6 122 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 TRAV41A0A0B4J266 112 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 C7orf71A4D174 169 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 LGALS1P09382 135 aaKnown RBP5.01□□□□□ -1.61
VPS53-217ENST00000575100 SPINK8P0C7L1 97 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 SYNJ2BPP57105 145 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 PRR4Q16378 134 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 C9orf66Q5T8R8 295 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 ZNF329Q86UD4 541 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 OR10P1Q8NGE3 313 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 FRZBQ92765 325 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 PLEKHB2Q96CS7 222 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 LINC01587Q99440 93 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 KRTAP3-1Q9BYR8 98 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 CACFD1Q9UGQ2 172 aa5.01□□□□□ -1.61
VPS53-217ENST00000575100 LOC389332A0A1B0GUA5 103 aa5□□□□□ -1.61
VPS53-217ENST00000575100 UBE2L5PA0A1B0GUS4 154 aa5□□□□□ -1.61
VPS53-217ENST00000575100 KANTRA0A1W2PQU2 76 aa5□□□□□ -1.61
VPS53-217ENST00000575100 I3L2K1 104 aa5□□□□□ -1.61
VPS53-217ENST00000575100 K7EIM0 57 aa5□□□□□ -1.61
VPS53-217ENST00000575100 DEFA4P12838 97 aa5□□□□□ -1.61
VPS53-217ENST00000575100 OPRK1P41145 380 aa5□□□□□ -1.61
VPS53-217ENST00000575100 CRIP2P52943 208 aaPredicted RBP5□□□□□ -1.61
VPS53-217ENST00000575100 ERCC8Q13216 396 aa5□□□□□ -1.61
VPS53-217ENST00000575100 MEIG1Q5JSS6 88 aa5□□□□□ -1.61
VPS53-217ENST00000575100 IGFL4Q6B9Z1 124 aa5□□□□□ -1.61
VPS53-217ENST00000575100 TMEM61Q8N0U2 210 aa5□□□□□ -1.61
VPS53-217ENST00000575100 GGTLC1Q9BX51 225 aa5□□□□□ -1.61
VPS53-217ENST00000575100 NOTCH1P46531 2555 aa5□□□□□ -1.61
VPS53-217ENST00000575100 CLPSL1A2RUU4 121 aa5□□□□□ -1.61
VPS53-217ENST00000575100 H3BQ15 152 aa5□□□□□ -1.61
VPS53-217ENST00000575100 ISLRO14498 428 aa5□□□□□ -1.61
VPS53-217ENST00000575100 IGHV3-23P01764 117 aa5□□□□□ -1.61
VPS53-217ENST00000575100 GATA2P23769 480 aaPredicted RBP5□□□□□ -1.61
VPS53-217ENST00000575100 EGFEM1PQ0D2K5 195 aa5□□□□□ -1.61
VPS53-217ENST00000575100 IBA57Q5T440 356 aaKnown RBP5□□□□□ -1.61
VPS53-217ENST00000575100 ZNF493Q6ZR52 646 aa5□□□□□ -1.61
VPS53-217ENST00000575100 TMEM183AQ8IXX5 376 aa5□□□□□ -1.61
VPS53-217ENST00000575100 Q8N2B8 174 aa5□□□□□ -1.61
VPS53-217ENST00000575100 KRTAP4-7Q9BYR0 210 aa5□□□□□ -1.61
VPS53-217ENST00000575100 JPT2Q9H910 190 aa5□□□□□ -1.61
VPS53-217ENST00000575100 MRPS16Q9Y3D3 137 aaKnown RBP5□□□□□ -1.61
VPS53-217ENST00000575100 IGKV1D-37A0A075B6S9 117 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 HIST1H2BKO60814 126 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 HIST1H2BJP06899 126 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 GPX1P07203 203 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 IGLC6P0CF74 106 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 HIST1H2BOP23527 126 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 HIST1H2BBP33778 126 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 HIST1H2BDP58876 126 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 KRTAP10-3P60369 221 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 HIST1H2BCP62807 126 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 DAZ2Q13117 558 aaKnown RBP4.99□□□□□ -1.61
VPS53-217ENST00000575100 HIST2H2BEQ16778 126 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.99□□□□□ -1.61
VPS53-217ENST00000575100 DAZ4Q86SG3 579 aaKnown RBP4.99□□□□□ -1.61
VPS53-217ENST00000575100 PRNTQ86SH4 94 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 HIST1H2BHQ93079 126 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 ZNF414Q96IQ9 312 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 KCNS1Q96KK3 526 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 MGST2Q99735 147 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 HIST1H2BNQ99877 126 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 HIST1H2BMQ99879 126 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 VAMP8Q9BV40 100 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 WDR61Q9GZS3 305 aaKnown RBP4.99□□□□□ -1.61
VPS53-217ENST00000575100 DAZ1Q9NQZ3 744 aaKnown RBP4.99□□□□□ -1.61
VPS53-217ENST00000575100 DAZ3Q9NR90 486 aaKnown RBP4.99□□□□□ -1.61
VPS53-217ENST00000575100 ZNF355PQ9NSJ1 428 aa4.99□□□□□ -1.61
VPS53-217ENST00000575100 FNDC10F2Z333 226 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 ZNF90Q03938 601 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 RBMY1FQ15415 496 aaKnown RBP4.98□□□□□ -1.61
VPS53-217ENST00000575100 TMEM183BQ1AE95 376 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 KLK9Q2XQG4 91 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 C15orf32Q32M92 178 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 GFI1BQ5VTD9 330 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 Q5XG85 94 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 AMMECR1LQ6DCA0 310 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 FAM19A3Q7Z5A8 133 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 CARD19Q96LW7 228 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 TMEM243Q9BU79 118 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 TMEM147Q9BVK8 224 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 KLK9Q9UKQ9 250 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 CXorf1O96002 111 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 TPT1P13693 172 aaKnown RBP4.98□□□□□ -1.61
VPS53-217ENST00000575100 PSMB8P28062 276 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 TPPP2P59282 170 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 C12orf74Q32Q52 190 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 NRACQ8N912 160 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 LINC01006Q8NI28 216 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 YPEL4Q96NS1 127 aa4.98□□□□□ -1.61
VPS53-217ENST00000575100 NPCDR1Q9BY65 106 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms