RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 LGALS9BQ3B8N2 356 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 ZNF876PQ49A33 203 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 MRPL54Q6P161 138 aaKnown RBP4.63□□□□□ -1.67
VPS53-209ENST00000570771 OR10AG1Q8NH19 301 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 RNASE8Q8TDE3 154 aaKnown RBP4.63□□□□□ -1.67
VPS53-209ENST00000570771 AP1S3Q96PC3 154 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 TM2D3Q9BRN9 247 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 GNB1LQ9BYB4 327 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 ZMAT4Q9H898 229 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 GSN-AS1Q9NRJ2 163 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 VPS13DQ5THJ4 4388 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 RYR2Q92736 4967 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 TGIF2-C20orf24A0A0A6YYL0 155 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 A0A1B0GXF2 115 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 A8MWV9 139 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 RHODO00212 210 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 CIDEAO60543 219 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 NXPH4O95158 308 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 RAB5AP20339 215 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 RPS10P46783 165 aaKnown RBP4.62□□□□□ -1.67
VPS53-209ENST00000570771 CAMPP49913 170 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 C11orf72Q8NBR9 251 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 YPEL4Q96NS1 127 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 B9D2Q9BPU9 175 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 OVOL2Q9BRP0 275 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 MDFICQ9P1T7 246 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 X6R8D5 127 aa4.62□□□□□ -1.67
VPS53-209ENST00000570771 MUC4Q99102 2169 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 ALMS1Q8TCU4 4167 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 TRGV1A0A0A0MS02 117 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 MUC21A0A0G2JKD1 596 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 MUC21A0A140T8X8 626 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 COLCA2A8K830 154 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 LYRM9A8MSI8 78 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 DEFB4AO15263 64 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 AZU1P20160 251 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 SSTP61278 116 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 ZNF575Q86XF7 245 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.61□□□□□ -1.67
VPS53-209ENST00000570771 GATD1Q8NB37 220 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 IL17DQ8TAD2 202 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 RASL10AQ92737 203 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 FRZBQ92765 325 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 TMEM191AQ9H0A3 160 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 DPH3P1Q9H4G8 78 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 NOP10Q9NPE3 64 aaKnown RBP4.61□□□□□ -1.67
VPS53-209ENST00000570771 TRAPPC1Q9Y5R8 145 aa4.61□□□□□ -1.67
VPS53-209ENST00000570771 HYDINQ4G0P3 5121 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 TRGV2A0A075B6R0 118 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 IGHV4-28A0A0C4DH34 117 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 PLAC8L1A1L4L8 177 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 PPP1R17O96001 155 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 APCSP02743 223 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 PPBPP02775 128 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 NHLRC4P0CG21 123 aaPredicted RBP4.6□□□□□ -1.67
VPS53-209ENST00000570771 SPART-AS1P0CW21 52 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 EMP1P54849 157 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 FABP9Q0Z7S8 132 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 TMEM136Q6ZRR5 245 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 Q8NAQ8 132 aa4.6□□□□□ -1.67
VPS53-209ENST00000570771 MRPL18Q9H0U6 180 aaKnown RBP4.6□□□□□ -1.67
VPS53-209ENST00000570771 C11orf68Q9H3H3 251 aaKnown RBP4.6□□□□□ -1.67
VPS53-209ENST00000570771 TRAV4A0A0B4J268 109 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 C1orf196B1AJZ1 125 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 H7C1H1 209 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 RS1O15537 224 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 MGPP08493 103 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 EVI2AP22794 236 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 DAD1P61803 113 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 FAM222AQ5U5X8 452 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 FAM104BQ5XKR9 115 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 ZFP2Q6ZN57 461 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 C14orf178Q8N769 122 aaPredicted RBP4.59□□□□□ -1.67
VPS53-209ENST00000570771 OR4C5Q8NGB2 326 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 MRAP2Q96G30 205 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 C18orf15Q96N68 181 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 MRPL16Q9NX20 251 aaKnown RBP4.59□□□□□ -1.67
VPS53-209ENST00000570771 MSRB1Q9NZV6 116 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 CELA1Q9UNI1 258 aa4.59□□□□□ -1.67
VPS53-209ENST00000570771 DNAH2Q9P225 4427 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 GAGE12BA1L429 117 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 F5H697 171 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 GAGE7O76087 117 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 GAGE12FP0CL80 117 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 GAGE12GP0CL81 117 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 GAGE12IP0CL82 117 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 CKS2P33552 79 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 RAB5BP61020 215 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 SLAQ13239 276 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 ZNF56Q15929 161 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 FAM74A4Q5TZK3 123 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 Q6ZTI0 123 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 AMN1Q8IY45 258 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 ORMDL3Q8N138 153 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 LINC00612Q8N6U2 182 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 EDA2RQ9HAV5 297 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 DKK2Q9UBU2 259 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 LAMTOR2Q9Y2Q5 125 aa4.58□□□□□ -1.68
VPS53-209ENST00000570771 A0A087WWL8 130 aa4.57□□□□□ -1.68
VPS53-209ENST00000570771 TRGV4A0A0C4DH28 118 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms