RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 SLC25A29Q8N8R3 303 aa9.52□□□□□ -0.89
CLN3-235ENST00000568497 KRTAP1-5Q9BYS1 174 aa9.52□□□□□ -0.89
CLN3-235ENST00000568497 IL36BQ9NZH7 164 aa9.52□□□□□ -0.89
CLN3-235ENST00000568497 PHLDA3Q9Y5J5 127 aa9.52□□□□□ -0.89
CLN3-235ENST00000568497 ICOSQ9Y6W8 199 aa9.52□□□□□ -0.89
CLN3-235ENST00000568497 C19orf71A6NCJ1 209 aa9.51□□□□□ -0.89
CLN3-235ENST00000568497 NUDT10Q8NFP7 164 aa9.51□□□□□ -0.89
CLN3-235ENST00000568497 FRZBQ92765 325 aa9.51□□□□□ -0.89
CLN3-235ENST00000568497 NUDT11Q96G61 164 aa9.51□□□□□ -0.89
CLN3-235ENST00000568497 FAM210AQ96ND0 272 aa9.51□□□□□ -0.89
CLN3-235ENST00000568497 MSRB1Q9NZV6 116 aa9.51□□□□□ -0.89
CLN3-235ENST00000568497 GAGE12JA6NER3 117 aa9.5□□□□□ -0.89
CLN3-235ENST00000568497 CCL18P55774 89 aa9.5□□□□□ -0.89
CLN3-235ENST00000568497 FAM3BP58499 235 aaPredicted RBP9.5□□□□□ -0.89
CLN3-235ENST00000568497 GAGE1Q13065 139 aa9.5□□□□□ -0.89
CLN3-235ENST00000568497 GAGE4Q13068 117 aa9.5□□□□□ -0.89
CLN3-235ENST00000568497 GAGE5Q13069 117 aa9.5□□□□□ -0.89
CLN3-235ENST00000568497 GAGE13Q4V321 117 aa9.5□□□□□ -0.89
CLN3-235ENST00000568497 UFSP1Q6NVU6 142 aa9.5□□□□□ -0.89
CLN3-235ENST00000568497 TXNDC17Q9BRA2 123 aa9.5□□□□□ -0.89
CLN3-235ENST00000568497 NBDYA0A0U1RRE5 68 aa9.49□□□□□ -0.89
CLN3-235ENST00000568497 CRYGDP07320 174 aa9.49□□□□□ -0.89
CLN3-235ENST00000568497 DNLZQ5SXM8 178 aa9.49□□□□□ -0.89
CLN3-235ENST00000568497 LYPD5Q6UWN5 251 aa9.49□□□□□ -0.89
CLN3-235ENST00000568497 DAZAP1Q96EP5 407 aaKnown RBP9.49□□□□□ -0.89
CLN3-235ENST00000568497 TNFRSF18Q9Y5U5 241 aa9.49□□□□□ -0.89
CLN3-235ENST00000568497 SRRM2Q9UQ35 2752 aaKnown RBP9.48□□□□□ -0.89
CLN3-235ENST00000568497 NXPH4O95158 308 aa9.48□□□□□ -0.89
CLN3-235ENST00000568497 P01737 135 aa9.48□□□□□ -0.89
CLN3-235ENST00000568497 SRIP30626 198 aa9.48□□□□□ -0.89
CLN3-235ENST00000568497 KRTAP10-2P60368 255 aa9.48□□□□□ -0.89
CLN3-235ENST00000568497 WFDC10BQ8IUB3 73 aa9.48□□□□□ -0.89
CLN3-235ENST00000568497 H3BNG1 76 aa9.47□□□□□ -0.89
CLN3-235ENST00000568497 IFITM2Q01629 132 aa9.47□□□□□ -0.89
CLN3-235ENST00000568497 MRPL23Q16540 153 aaKnown RBP9.47□□□□□ -0.89
CLN3-235ENST00000568497 Q8N3U1 123 aa9.47□□□□□ -0.89
CLN3-235ENST00000568497 SYT8Q8NBV8 401 aa9.47□□□□□ -0.89
CLN3-235ENST00000568497 SFRP2Q96HF1 295 aa9.47□□□□□ -0.89
CLN3-235ENST00000568497 SMIM7Q9BQ49 75 aa9.47□□□□□ -0.89
CLN3-235ENST00000568497 Q9H8V8 135 aa9.47□□□□□ -0.89
CLN3-235ENST00000568497 MRPS16Q9Y3D3 137 aaKnown RBP9.47□□□□□ -0.89
CLN3-235ENST00000568497 FAT1Q14517 4588 aa9.47□□□□□ -0.89
CLN3-235ENST00000568497 ZNF727A8MUV8 499 aa9.46□□□□□ -0.9
CLN3-235ENST00000568497 A8MWV9 139 aa9.46□□□□□ -0.9
CLN3-235ENST00000568497 SNAI2O43623 268 aa9.46□□□□□ -0.9
CLN3-235ENST00000568497 IGLC6P0CF74 106 aa9.46□□□□□ -0.9
CLN3-235ENST00000568497 TAGLN2P37802 199 aaKnown RBP9.46□□□□□ -0.9
CLN3-235ENST00000568497 SPANXN1Q5VSR9 72 aa9.46□□□□□ -0.9
CLN3-235ENST00000568497 LYZL1Q6UWQ5 148 aa9.46□□□□□ -0.9
CLN3-235ENST00000568497 NEGR1Q7Z3B1 354 aa9.46□□□□□ -0.9
CLN3-235ENST00000568497 ZFP82Q8N141 532 aa9.46□□□□□ -0.9
CLN3-235ENST00000568497 FER1L6-AS1Q8NA97 138 aa9.46□□□□□ -0.9
CLN3-235ENST00000568497 DEFB104AQ8WTQ1 72 aa9.46□□□□□ -0.9
CLN3-235ENST00000568497 PTH2Q96A98 100 aa9.46□□□□□ -0.9
CLN3-235ENST00000568497 TMEM250H0YL14 139 aa9.45□□□□□ -0.9
CLN3-235ENST00000568497 FOXA3P55318 350 aaPredicted RBP9.45□□□□□ -0.9
CLN3-235ENST00000568497 SLAQ13239 276 aa9.45□□□□□ -0.9
CLN3-235ENST00000568497 GTSF1Q8WW33 167 aa9.45□□□□□ -0.9
CLN3-235ENST00000568497 SSBP4Q9BWG4 385 aaPredicted RBP9.45□□□□□ -0.9
CLN3-235ENST00000568497 MGPP08493 103 aa9.44□□□□□ -0.9
CLN3-235ENST00000568497 RHOHQ15669 191 aa9.44□□□□□ -0.9
CLN3-235ENST00000568497 ZNF56Q15929 161 aa9.44□□□□□ -0.9
CLN3-235ENST00000568497 PRADC1Q9BSG0 188 aa9.44□□□□□ -0.9
CLN3-235ENST00000568497 RPP21Q9H633 154 aaKnown RBP9.44□□□□□ -0.9
CLN3-235ENST00000568497 IGHV3-38A0A0C4DH36 116 aa9.43□□□□□ -0.9
CLN3-235ENST00000568497 GATCO43716 136 aaKnown RBP9.43□□□□□ -0.9
CLN3-235ENST00000568497 LINC01551Q86U37 167 aa9.43□□□□□ -0.9
CLN3-235ENST00000568497 PGLYRP4Q96LB8 373 aa9.43□□□□□ -0.9
CLN3-235ENST00000568497 VPS13BQ7Z7G8 4022 aa9.43□□□□□ -0.9
CLN3-235ENST00000568497 TRBV6-4A0A1B0GX49 114 aa9.42□□□□□ -0.9
CLN3-235ENST00000568497 F5H697 171 aa9.42□□□□□ -0.9
CLN3-235ENST00000568497 CXCL1P09341 107 aa9.42□□□□□ -0.9
CLN3-235ENST00000568497 OR5AL1P0C617 328 aa9.42□□□□□ -0.9
CLN3-235ENST00000568497 EVI2AP22794 236 aa9.42□□□□□ -0.9
CLN3-235ENST00000568497 LINC00315P59091 139 aa9.42□□□□□ -0.9
CLN3-235ENST00000568497 ERVFC1-1P60608 527 aa9.42□□□□□ -0.9
CLN3-235ENST00000568497 KIF25-AS1Q9Y6Z4 181 aa9.42□□□□□ -0.9
CLN3-235ENST00000568497 LINC00694P0DN24 101 aa9.41□□□□□ -0.9
CLN3-235ENST00000568497 FUSP35637 526 aaKnown RBP eCLIP9.41□□□□□ -0.9
CLN3-235ENST00000568497 RPS20P60866 119 aaKnown RBP9.41□□□□□ -0.9
CLN3-235ENST00000568497 RPL23P62829 140 aaKnown RBP9.41□□□□□ -0.9
CLN3-235ENST00000568497 ADIRFQ15847 76 aa9.41□□□□□ -0.9
CLN3-235ENST00000568497 ZFP2Q6ZN57 461 aa9.41□□□□□ -0.9
CLN3-235ENST00000568497 ATP6V0E2Q8NHE4 81 aa9.41□□□□□ -0.9
CLN3-235ENST00000568497 UPK3BQ9BT76 320 aa9.41□□□□□ -0.9
CLN3-235ENST00000568497 SIVA1O15304 175 aa9.4□□□□□ -0.9
CLN3-235ENST00000568497 IGHV3-30P01768 117 aa9.4□□□□□ -0.9
CLN3-235ENST00000568497 IGHV3-33P01772 117 aa9.4□□□□□ -0.9
CLN3-235ENST00000568497 IGHV3-30-3P0DP02 117 aa9.4□□□□□ -0.9
CLN3-235ENST00000568497 IGHV3-30-5P0DP03 117 aa9.4□□□□□ -0.9
CLN3-235ENST00000568497 NTF3P20783 257 aa9.4□□□□□ -0.9
CLN3-235ENST00000568497 PEA15Q15121 130 aa9.4□□□□□ -0.9
CLN3-235ENST00000568497 SMIM12Q96EX1 92 aa9.4□□□□□ -0.9
CLN3-235ENST00000568497 TRAV26-2A0A0B4J265 109 aa9.39□□□□□ -0.91
CLN3-235ENST00000568497 CIDEAO60543 219 aa9.39□□□□□ -0.91
CLN3-235ENST00000568497 SMR3BP02814 79 aaPredicted RBP9.39□□□□□ -0.91
CLN3-235ENST00000568497 BTF3P20290 206 aaKnown RBP9.39□□□□□ -0.91
CLN3-235ENST00000568497 XGP55808 180 aa9.39□□□□□ -0.91
CLN3-235ENST00000568497 TWIST1Q15672 202 aa9.39□□□□□ -0.91
CLN3-235ENST00000568497 OR10J3Q5JRS4 329 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms