RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 SMIM17P0DL12 118 aa8.51□□□□□ -1.05
SF3B3-208ENST00000567250 GATA1P15976 413 aaPredicted RBP8.51□□□□□ -1.05
SF3B3-208ENST00000567250 BORCS7Q96B45 105 aa8.51□□□□□ -1.05
SF3B3-208ENST00000567250 PRADC1Q9BSG0 188 aa8.51□□□□□ -1.05
SF3B3-208ENST00000567250 GFRA4Q9GZZ7 299 aa8.51□□□□□ -1.05
SF3B3-208ENST00000567250 FAM231BA6NCW3 169 aa8.5□□□□□ -1.05
SF3B3-208ENST00000567250 TRGC1P0CF51 173 aa8.5□□□□□ -1.05
SF3B3-208ENST00000567250 CCL18P55774 89 aa8.5□□□□□ -1.05
SF3B3-208ENST00000567250 MRPL23Q16540 153 aaKnown RBP8.5□□□□□ -1.05
SF3B3-208ENST00000567250 COMMD7Q86VX2 200 aa8.5□□□□□ -1.05
SF3B3-208ENST00000567250 VSIG2Q96IQ7 327 aa8.5□□□□□ -1.05
SF3B3-208ENST00000567250 DYNC2H1Q8NCM8 4307 aaKnown RBP8.5□□□□□ -1.05
SF3B3-208ENST00000567250 IGHV3-73A0A0B4J1V6 119 aa8.49□□□□□ -1.05
SF3B3-208ENST00000567250 K7EQD1 137 aa8.49□□□□□ -1.05
SF3B3-208ENST00000567250 SRIP30626 198 aa8.49□□□□□ -1.05
SF3B3-208ENST00000567250 FAM3BP58499 235 aaPredicted RBP8.49□□□□□ -1.05
SF3B3-208ENST00000567250 RNF212Q495C1 297 aa8.49□□□□□ -1.05
SF3B3-208ENST00000567250 WDR73Q6P4I2 378 aa8.49□□□□□ -1.05
SF3B3-208ENST00000567250 LYZL1Q6UWQ5 148 aa8.49□□□□□ -1.05
SF3B3-208ENST00000567250 SH2D6Q7Z4S9 175 aa8.49□□□□□ -1.05
SF3B3-208ENST00000567250 OR10G8Q8NGN5 311 aa8.49□□□□□ -1.05
SF3B3-208ENST00000567250 TSKUQ8WUA8 353 aa8.49□□□□□ -1.05
SF3B3-208ENST00000567250 CNFNQ9BYD5 112 aa8.49□□□□□ -1.05
SF3B3-208ENST00000567250 A0A087WWL8 130 aa8.48□□□□□ -1.05
SF3B3-208ENST00000567250 A0A096LPF7 62 aa8.48□□□□□ -1.05
SF3B3-208ENST00000567250 MUC21A0A0G2JKD1 596 aa8.48□□□□□ -1.05
SF3B3-208ENST00000567250 MUC21A0A140T8X8 626 aa8.48□□□□□ -1.05
SF3B3-208ENST00000567250 LINC00862A6NCI5 91 aa8.48□□□□□ -1.05
SF3B3-208ENST00000567250 GYPEP15421 78 aa8.48□□□□□ -1.05
SF3B3-208ENST00000567250 ZNF56Q15929 161 aa8.48□□□□□ -1.05
SF3B3-208ENST00000567250 SLC25A29Q8N8R3 303 aa8.48□□□□□ -1.05
SF3B3-208ENST00000567250 JPT2Q9H910 190 aa8.48□□□□□ -1.05
SF3B3-208ENST00000567250 HIGD1CA8MV81 97 aa8.47□□□□□ -1.05
SF3B3-208ENST00000567250 F8W036 122 aa8.47□□□□□ -1.05
SF3B3-208ENST00000567250 PPP1R2P9O14990 202 aa8.47□□□□□ -1.05
SF3B3-208ENST00000567250 SSTP61278 116 aa8.47□□□□□ -1.05
SF3B3-208ENST00000567250 UFSP1Q6NVU6 142 aa8.47□□□□□ -1.05
SF3B3-208ENST00000567250 SMIM15Q7Z3B0 74 aa8.47□□□□□ -1.05
SF3B3-208ENST00000567250 GTSF1Q8WW33 167 aa8.47□□□□□ -1.05
SF3B3-208ENST00000567250 SAMD10Q9BYL1 202 aa8.47□□□□□ -1.05
SF3B3-208ENST00000567250 V9GYV3 84 aa8.47□□□□□ -1.05
SF3B3-208ENST00000567250 LYSTQ99698 3801 aa8.46□□□□□ -1.05
SF3B3-208ENST00000567250 PLECQ15149 4684 aaKnown RBP8.46□□□□□ -1.05
SF3B3-208ENST00000567250 TMEM218A2RU14 115 aa8.46□□□□□ -1.06
SF3B3-208ENST00000567250 CRYGDP07320 174 aa8.46□□□□□ -1.06
SF3B3-208ENST00000567250 NTF3P20783 257 aa8.46□□□□□ -1.06
SF3B3-208ENST00000567250 FOXA3P55318 350 aaPredicted RBP8.46□□□□□ -1.06
SF3B3-208ENST00000567250 RAB4BP61018 213 aa8.46□□□□□ -1.06
SF3B3-208ENST00000567250 TWIST1Q15672 202 aa8.46□□□□□ -1.06
SF3B3-208ENST00000567250 NEGR1Q7Z3B1 354 aa8.46□□□□□ -1.06
SF3B3-208ENST00000567250 C14orf178Q8N769 122 aaPredicted RBP8.46□□□□□ -1.06
SF3B3-208ENST00000567250 DPH3P1Q9H4G8 78 aa8.46□□□□□ -1.06
SF3B3-208ENST00000567250 NAT8BQ9UHF3 227 aa8.46□□□□□ -1.06
SF3B3-208ENST00000567250 ALMS1Q8TCU4 4167 aa8.45□□□□□ -1.06
SF3B3-208ENST00000567250 TRBV10-1A0A0K0K1A3 114 aa8.45□□□□□ -1.06
SF3B3-208ENST00000567250 A0A1B0GUT8 65 aa8.45□□□□□ -1.06
SF3B3-208ENST00000567250 F5H697 171 aa8.45□□□□□ -1.06
SF3B3-208ENST00000567250 H7C1H1 209 aa8.45□□□□□ -1.06
SF3B3-208ENST00000567250 MT-ND4LP03901 98 aa8.45□□□□□ -1.06
SF3B3-208ENST00000567250 PGLYRP4Q96LB8 373 aa8.45□□□□□ -1.06
SF3B3-208ENST00000567250 SEC11CQ9BY50 192 aa8.45□□□□□ -1.06
SF3B3-208ENST00000567250 MGPP08493 103 aa8.44□□□□□ -1.06
SF3B3-208ENST00000567250 ANAPC16Q96DE5 110 aa8.44□□□□□ -1.06
SF3B3-208ENST00000567250 KMT2CQ8NEZ4 4911 aaKnown RBP8.43□□□□□ -1.06
SF3B3-208ENST00000567250 LOC100131303A0A0U1RQF7 123 aa8.43□□□□□ -1.06
SF3B3-208ENST00000567250 SMIM27A0A1W2PRY6 76 aa8.43□□□□□ -1.06
SF3B3-208ENST00000567250 ADCYAP1P18509 176 aa8.43□□□□□ -1.06
SF3B3-208ENST00000567250 EVI2AP22794 236 aa8.43□□□□□ -1.06
SF3B3-208ENST00000567250 RPL36AP83881 106 aaKnown RBP8.43□□□□□ -1.06
SF3B3-208ENST00000567250 RIGQ13278 110 aa8.43□□□□□ -1.06
SF3B3-208ENST00000567250 LCE2AQ5TA79 106 aaPredicted RBP8.43□□□□□ -1.06
SF3B3-208ENST00000567250 LCE2CQ5TA81 110 aa8.43□□□□□ -1.06
SF3B3-208ENST00000567250 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.43□□□□□ -1.06
SF3B3-208ENST00000567250 RPL36ALQ969Q0 106 aaKnown RBP8.43□□□□□ -1.06
SF3B3-208ENST00000567250 UPK3BQ9BT76 320 aa8.43□□□□□ -1.06
SF3B3-208ENST00000567250 MSRB1Q9NZV6 116 aa8.43□□□□□ -1.06
SF3B3-208ENST00000567250 MRPS16Q9Y3D3 137 aaKnown RBP8.43□□□□□ -1.06
SF3B3-208ENST00000567250 LINC00588Q9Y4M8 146 aa8.43□□□□□ -1.06
SF3B3-208ENST00000567250 TIRAPP58753 221 aa8.42□□□□□ -1.06
SF3B3-208ENST00000567250 NUP35Q8NFH5 326 aa8.42□□□□□ -1.06
SF3B3-208ENST00000567250 KIF25-AS1Q9Y6Z4 181 aa8.42□□□□□ -1.06
SF3B3-208ENST00000567250 A0A1B0GW15 77 aa8.41□□□□□ -1.06
SF3B3-208ENST00000567250 GAGE12JA6NER3 117 aa8.41□□□□□ -1.06
SF3B3-208ENST00000567250 S100A8P05109 93 aa8.41□□□□□ -1.06
SF3B3-208ENST00000567250 GAGE1Q13065 139 aa8.41□□□□□ -1.06
SF3B3-208ENST00000567250 GAGE4Q13068 117 aa8.41□□□□□ -1.06
SF3B3-208ENST00000567250 GAGE5Q13069 117 aa8.41□□□□□ -1.06
SF3B3-208ENST00000567250 NDUFA5Q16718 116 aa8.41□□□□□ -1.06
SF3B3-208ENST00000567250 ESRGQ1W209 222 aa8.41□□□□□ -1.06
SF3B3-208ENST00000567250 GAGE13Q4V321 117 aa8.41□□□□□ -1.06
SF3B3-208ENST00000567250 Q6ZSN1 163 aa8.41□□□□□ -1.06
SF3B3-208ENST00000567250 ATP6V0E2Q8NHE4 81 aa8.41□□□□□ -1.06
SF3B3-208ENST00000567250 TRBV7-3A0A075B6L6 115 aa8.4□□□□□ -1.06
SF3B3-208ENST00000567250 LINC00694P0DN24 101 aa8.4□□□□□ -1.06
SF3B3-208ENST00000567250 LYPD5Q6UWN5 251 aa8.4□□□□□ -1.06
SF3B3-208ENST00000567250 FRZBQ92765 325 aa8.4□□□□□ -1.06
SF3B3-208ENST00000567250 TMEM191AQ9H0A3 160 aa8.4□□□□□ -1.06
SF3B3-208ENST00000567250 GTSF1LQ9H1H1 148 aa8.4□□□□□ -1.06
SF3B3-208ENST00000567250 A0A087WWC5 75 aa8.39□□□□□ -1.07
SF3B3-208ENST00000567250 LINC00315P59091 139 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms