RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 CAMPP49913 170 aa9.54□□□□□ -0.88
CLK3-218ENST00000566926 RAB4BP61018 213 aa9.54□□□□□ -0.88
CLK3-218ENST00000566926 RAB5BP61020 215 aa9.54□□□□□ -0.88
CLK3-218ENST00000566926 ZNF415Q09FC8 603 aa9.54□□□□□ -0.88
CLK3-218ENST00000566926 TWIST1Q15672 202 aa9.54□□□□□ -0.88
CLK3-218ENST00000566926 SPANXN1Q5VSR9 72 aa9.54□□□□□ -0.88
CLK3-218ENST00000566926 Q6ZQT7 251 aa9.54□□□□□ -0.88
CLK3-218ENST00000566926 SYT8Q8NBV8 401 aa9.54□□□□□ -0.88
CLK3-218ENST00000566926 FRZBQ92765 325 aa9.54□□□□□ -0.88
CLK3-218ENST00000566926 C9orf85Q96MD7 179 aa9.54□□□□□ -0.88
CLK3-218ENST00000566926 GNRH2O43555 120 aa9.53□□□□□ -0.88
CLK3-218ENST00000566926 PRM2P04554 102 aa9.53□□□□□ -0.88
CLK3-218ENST00000566926 RNASE3P12724 160 aaKnown RBP9.53□□□□□ -0.88
CLK3-218ENST00000566926 TMEM136Q6ZRR5 245 aa9.53□□□□□ -0.88
CLK3-218ENST00000566926 RNASE8Q8TDE3 154 aaKnown RBP9.53□□□□□ -0.88
CLK3-218ENST00000566926 PTH2Q96A98 100 aa9.53□□□□□ -0.88
CLK3-218ENST00000566926 SPXQ9BT56 116 aa9.53□□□□□ -0.88
CLK3-218ENST00000566926 PLAC8L1A1L4L8 177 aa9.52□□□□□ -0.89
CLK3-218ENST00000566926 APCSP02743 223 aa9.52□□□□□ -0.89
CLK3-218ENST00000566926 TRGC2P03986 189 aa9.52□□□□□ -0.89
CLK3-218ENST00000566926 NTF3P20783 257 aa9.52□□□□□ -0.89
CLK3-218ENST00000566926 TMEM191AQ9H0A3 160 aa9.52□□□□□ -0.89
CLK3-218ENST00000566926 MRPL18Q9H0U6 180 aaKnown RBP9.52□□□□□ -0.89
CLK3-218ENST00000566926 DEFB130BP0DP73 79 aa9.51□□□□□ -0.89
CLK3-218ENST00000566926 DEFB130AP0DP74 79 aa9.51□□□□□ -0.89
CLK3-218ENST00000566926 HTN3P15516 51 aa9.51□□□□□ -0.89
CLK3-218ENST00000566926 FABP9Q0Z7S8 132 aa9.51□□□□□ -0.89
CLK3-218ENST00000566926 DMRTA1Q5VZB9 504 aa9.51□□□□□ -0.89
CLK3-218ENST00000566926 OR10AG1Q8NH19 301 aa9.51□□□□□ -0.89
CLK3-218ENST00000566926 AP1S3Q96PC3 154 aa9.51□□□□□ -0.89
CLK3-218ENST00000566926 NOP10Q9NPE3 64 aaKnown RBP9.51□□□□□ -0.89
CLK3-218ENST00000566926 RYR2Q92736 4967 aa9.51□□□□□ -0.89
CLK3-218ENST00000566926 ATP5G1P05496 136 aa9.5□□□□□ -0.89
CLK3-218ENST00000566926 P0DMU3 169 aa9.5□□□□□ -0.89
CLK3-218ENST00000566926 FAM231AP0DMU4 169 aa9.5□□□□□ -0.89
CLK3-218ENST00000566926 FAM231CP0DMU5 169 aa9.5□□□□□ -0.89
CLK3-218ENST00000566926 DNAH1Q9P2D7 4330 aa9.5□□□□□ -0.89
CLK3-218ENST00000566926 M0R2P5 195 aa9.49□□□□□ -0.89
CLK3-218ENST00000566926 M0R381 172 aa9.49□□□□□ -0.89
CLK3-218ENST00000566926 PHOX2AO14813 284 aa9.49□□□□□ -0.89
CLK3-218ENST00000566926 PPBPP02775 128 aa9.49□□□□□ -0.89
CLK3-218ENST00000566926 C15orf53Q8NAA6 179 aa9.49□□□□□ -0.89
CLK3-218ENST00000566926 MDFICQ9P1T7 246 aa9.49□□□□□ -0.89
CLK3-218ENST00000566926 SMIM17P0DL12 118 aa9.48□□□□□ -0.89
CLK3-218ENST00000566926 DAZ2Q13117 558 aaKnown RBP9.48□□□□□ -0.89
CLK3-218ENST00000566926 LGALS9BQ3B8N2 356 aa9.48□□□□□ -0.89
CLK3-218ENST00000566926 FAM104BQ5XKR9 115 aa9.48□□□□□ -0.89
CLK3-218ENST00000566926 C11orf72Q8NBR9 251 aa9.48□□□□□ -0.89
CLK3-218ENST00000566926 A8MWV9 139 aa9.47□□□□□ -0.89
CLK3-218ENST00000566926 F5H768 121 aa9.47□□□□□ -0.89
CLK3-218ENST00000566926 SLAQ13239 276 aa9.47□□□□□ -0.89
CLK3-218ENST00000566926 ZNF876PQ49A33 203 aa9.47□□□□□ -0.89
CLK3-218ENST00000566926 DPH3P1Q9H4G8 78 aa9.47□□□□□ -0.89
CLK3-218ENST00000566926 LAMTOR2Q9Y2Q5 125 aa9.47□□□□□ -0.89
CLK3-218ENST00000566926 HYDINQ4G0P3 5121 aa9.47□□□□□ -0.89
CLK3-218ENST00000566926 MUC4Q99102 2169 aa9.46□□□□□ -0.89
CLK3-218ENST00000566926 MUC21A0A0G2JKD1 596 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 MUC21A0A140T8X8 626 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 HIST1H2BKO60814 126 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 S100A6P06703 90 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 HIST1H2BJP06899 126 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 HIST1H2BOP23527 126 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 HIST1H2BBP33778 126 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 HIST1H2BDP58876 126 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 HIST1H2BCP62807 126 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 HIST2H2BEQ16778 126 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.46□□□□□ -0.9
CLK3-218ENST00000566926 LINC00612Q8N6U2 182 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 HIST1H2BHQ93079 126 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 HIST1H2BNQ99877 126 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 HIST1H2BMQ99879 126 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 GSN-AS1Q9NRJ2 163 aa9.46□□□□□ -0.9
CLK3-218ENST00000566926 TMA7Q9Y2S6 64 aaKnown RBP9.46□□□□□ -0.9
CLK3-218ENST00000566926 PPP1R17O96001 155 aa9.45□□□□□ -0.9
CLK3-218ENST00000566926 OR10J3Q5JRS4 329 aa9.45□□□□□ -0.9
CLK3-218ENST00000566926 ORMDL3Q8N138 153 aa9.45□□□□□ -0.9
CLK3-218ENST00000566926 POM121L12Q8N7R1 296 aa9.45□□□□□ -0.9
CLK3-218ENST00000566926 RASL10AQ92737 203 aa9.45□□□□□ -0.9
CLK3-218ENST00000566926 MRAP2Q96G30 205 aa9.45□□□□□ -0.9
CLK3-218ENST00000566926 MSRB1Q9NZV6 116 aa9.45□□□□□ -0.9
CLK3-218ENST00000566926 NACAE9PAV3 2078 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 GAGE12BA1L429 117 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 RHODO00212 210 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 CIDEAO60543 219 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 GAGE7O76087 117 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 GAGE12FP0CL80 117 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 GAGE12GP0CL81 117 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 GAGE12IP0CL82 117 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 EVI2AP22794 236 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 SSTP61278 116 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 UBE2DNLQ8IWF7 75 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 AMN1Q8IY45 258 aa9.44□□□□□ -0.9
CLK3-218ENST00000566926 TRGV2A0A075B6R0 118 aa9.43□□□□□ -0.9
CLK3-218ENST00000566926 RAB4AP20338 218 aa9.43□□□□□ -0.9
CLK3-218ENST00000566926 SRIP30626 198 aa9.43□□□□□ -0.9
CLK3-218ENST00000566926 Q0VG73 95 aa9.43□□□□□ -0.9
CLK3-218ENST00000566926 C14orf178Q8N769 122 aaPredicted RBP9.43□□□□□ -0.9
CLK3-218ENST00000566926 C18orf15Q96N68 181 aa9.43□□□□□ -0.9
CLK3-218ENST00000566926 ALKBH7Q9BT30 221 aaPredicted RBP9.43□□□□□ -0.9
CLK3-218ENST00000566926 KMT2AQ03164 3969 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms