RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 FAM74A4Q5TZK3 123 aa15.06■□□□□ 0
CLN3-215ENST00000565236 Q9UF83 564 aa15.06■□□□□ 0
CLN3-215ENST00000565236 M0R381 172 aa15.05■□□□□ -0
CLN3-215ENST00000565236 S100A9P06702 114 aaKnown RBP15.05■□□□□ -0
CLN3-215ENST00000565236 LINC00694P0DN24 101 aa15.05■□□□□ -0
CLN3-215ENST00000565236 GCSHP23434 173 aa15.05■□□□□ -0
CLN3-215ENST00000565236 KRTAP10-1P60331 282 aa15.05■□□□□ -0
CLN3-215ENST00000565236 A0A087WWC5 75 aa15.04■□□□□ -0
CLN3-215ENST00000565236 LRCOL1A6NCL2 159 aa15.04■□□□□ -0
CLN3-215ENST00000565236 BCL2L11O43521 198 aa15.04■□□□□ -0
CLN3-215ENST00000565236 LAGE3Q14657 143 aa15.04■□□□□ -0
CLN3-215ENST00000565236 SFRP2Q96HF1 295 aa15.04■□□□□ -0
CLN3-215ENST00000565236 A0A087WWL8 130 aa15.03■□□□□ -0
CLN3-215ENST00000565236 PFDN1O60925 122 aa15.03■□□□□ -0
CLN3-215ENST00000565236 XGP55808 180 aa15.03■□□□□ -0
CLN3-215ENST00000565236 EIF5AP63241 154 aaKnown RBP15.03■□□□□ -0
CLN3-215ENST00000565236 ZFP82Q8N141 532 aa15.03■□□□□ -0
CLN3-215ENST00000565236 H2AFB1P0C5Y9 115 aa15.02■□□□□ -0
CLN3-215ENST00000565236 TM2D2Q9BX73 214 aa15.02■□□□□ -0
CLN3-215ENST00000565236 IGLV5-52A0A0A0MRZ9 124 aa15.01□□□□□ -0.01
CLN3-215ENST00000565236 EPM2AB3EWF7 344 aa15.01□□□□□ -0.01
CLN3-215ENST00000565236 Q8N3U1 123 aa15.01□□□□□ -0.01
CLN3-215ENST00000565236 NTN5Q8WTR8 489 aaPredicted RBP15.01□□□□□ -0.01
CLN3-215ENST00000565236 SCO2A0A1W2PP80 73 aa15□□□□□ -0.01
CLN3-215ENST00000565236 BAGE2Q86Y30 109 aa15□□□□□ -0.01
CLN3-215ENST00000565236 TRAV8-3A0A0A6YYJ7 113 aa14.99□□□□□ -0.01
CLN3-215ENST00000565236 TMUB2Q71RG4 321 aa14.99□□□□□ -0.01
CLN3-215ENST00000565236 DAZ4Q86SG3 579 aaKnown RBP14.99□□□□□ -0.01
CLN3-215ENST00000565236 DAZ3Q9NR90 486 aaKnown RBP14.99□□□□□ -0.01
CLN3-215ENST00000565236 TOR2AQ5JU69 321 aa14.98□□□□□ -0.01
CLN3-215ENST00000565236 Q8N814 137 aa14.98□□□□□ -0.01
CLN3-215ENST00000565236 MLST8Q9BVC4 326 aa14.98□□□□□ -0.01
CLN3-215ENST00000565236 URGCP-MRPS24S4R325 110 aa14.98□□□□□ -0.01
CLN3-215ENST00000565236 RPL19P84098 196 aaKnown RBP14.97□□□□□ -0.01
CLN3-215ENST00000565236 TRBV10-1A0A0K0K1A3 114 aa14.96□□□□□ -0.01
CLN3-215ENST00000565236 RPL36AP83881 106 aaKnown RBP14.96□□□□□ -0.01
CLN3-215ENST00000565236 RPL36ALQ969Q0 106 aaKnown RBP14.96□□□□□ -0.01
CLN3-215ENST00000565236 PRR27Q6MZM9 219 aa14.95□□□□□ -0.02
CLN3-215ENST00000565236 CXCL1P09341 107 aa14.94□□□□□ -0.02
CLN3-215ENST00000565236 NIT1Q86X76 327 aa14.94□□□□□ -0.02
CLN3-215ENST00000565236 OR10AG1Q8NH19 301 aa14.94□□□□□ -0.02
CLN3-215ENST00000565236 FRZBQ92765 325 aa14.94□□□□□ -0.02
CLN3-215ENST00000565236 TRBV7-3A0A075B6L6 115 aa14.93□□□□□ -0.02
CLN3-215ENST00000565236 RAB4BP61018 213 aa14.93□□□□□ -0.02
CLN3-215ENST00000565236 MANBALQ9NQG1 85 aa14.93□□□□□ -0.02
CLN3-215ENST00000565236 GNG13Q9P2W3 67 aa14.93□□□□□ -0.02
CLN3-215ENST00000565236 FAT1Q14517 4588 aa14.93□□□□□ -0.02
CLN3-215ENST00000565236 RPL35P42766 123 aaKnown RBP14.92□□□□□ -0.02
CLN3-215ENST00000565236 CCL20P78556 96 aa14.92□□□□□ -0.02
CLN3-215ENST00000565236 COX11Q9Y6N1 276 aa14.92□□□□□ -0.02
CLN3-215ENST00000565236 A0A087WX48 190 aa14.91□□□□□ -0.02
CLN3-215ENST00000565236 RAB5CP51148 216 aa14.91□□□□□ -0.02
CLN3-215ENST00000565236 UBE2D3P61077 147 aa14.91□□□□□ -0.02
CLN3-215ENST00000565236 UBE2D2P62837 147 aa14.91□□□□□ -0.02
CLN3-215ENST00000565236 ZNF56Q15929 161 aa14.91□□□□□ -0.02
CLN3-215ENST00000565236 SPANXN1Q5VSR9 72 aa14.91□□□□□ -0.02
CLN3-215ENST00000565236 EIF5AL1Q6IS14 154 aaKnown RBP14.91□□□□□ -0.02
CLN3-215ENST00000565236 KCNIP4Q6PIL6 250 aa14.91□□□□□ -0.02
CLN3-215ENST00000565236 RMI2Q96E14 147 aa14.91□□□□□ -0.02
CLN3-215ENST00000565236 TMEM70Q9BUB7 260 aa14.91□□□□□ -0.02
CLN3-215ENST00000565236 SSBP4Q9BWG4 385 aaPredicted RBP14.91□□□□□ -0.02
CLN3-215ENST00000565236 TRAV1-1A0A0B4J248 108 aa14.9□□□□□ -0.02
CLN3-215ENST00000565236 MUC21A0A0G2JKD1 596 aa14.9□□□□□ -0.02
CLN3-215ENST00000565236 MUC21A0A140T8X8 626 aa14.9□□□□□ -0.02
CLN3-215ENST00000565236 TEX46H3BTG2 121 aa14.9□□□□□ -0.02
CLN3-215ENST00000565236 SNAI2O43623 268 aa14.9□□□□□ -0.02
CLN3-215ENST00000565236 SMR3BP02814 79 aaPredicted RBP14.9□□□□□ -0.02
CLN3-215ENST00000565236 OR5AL1P0C617 328 aa14.9□□□□□ -0.02
CLN3-215ENST00000565236 Q5VSD8 79 aa14.9□□□□□ -0.02
CLN3-215ENST00000565236 KLK12Q9UKR0 248 aa14.9□□□□□ -0.02
CLN3-215ENST00000565236 LECT2O14960 151 aa14.89□□□□□ -0.03
CLN3-215ENST00000565236 SSTP61278 116 aa14.89□□□□□ -0.03
CLN3-215ENST00000565236 WFDC2Q14508 124 aa14.89□□□□□ -0.03
CLN3-215ENST00000565236 ELOBQ15370 118 aa14.89□□□□□ -0.03
CLN3-215ENST00000565236 OR10G8Q8NGN5 311 aa14.89□□□□□ -0.03
CLN3-215ENST00000565236 DERL1Q9BUN8 251 aa14.89□□□□□ -0.03
CLN3-215ENST00000565236 F5H697 171 aa14.88□□□□□ -0.03
CLN3-215ENST00000565236 INAFM2P0DMQ5 153 aa14.88□□□□□ -0.03
CLN3-215ENST00000565236 C11orf52Q96A22 123 aa14.88□□□□□ -0.03
CLN3-215ENST00000565236 CHCHD7Q9BUK0 85 aa14.88□□□□□ -0.03
CLN3-215ENST00000565236 IGKV2D-24A0A075B6R9 120 aa14.87□□□□□ -0.03
CLN3-215ENST00000565236 HAMPP81172 84 aa14.87□□□□□ -0.03
CLN3-215ENST00000565236 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.87□□□□□ -0.03
CLN3-215ENST00000565236 NEXN-AS1Q8NBZ9 246 aa14.87□□□□□ -0.03
CLN3-215ENST00000565236 BAALCQ8WXS3 180 aa14.87□□□□□ -0.03
CLN3-215ENST00000565236 UBE2WQ96B02 151 aa14.87□□□□□ -0.03
CLN3-215ENST00000565236 TMEM262E9PQX1 116 aa14.86□□□□□ -0.03
CLN3-215ENST00000565236 SMIM17P0DL12 118 aa14.86□□□□□ -0.03
CLN3-215ENST00000565236 DAZAP1Q96EP5 407 aaKnown RBP14.86□□□□□ -0.03
CLN3-215ENST00000565236 TRBV6-8A0A0A6YYG3 113 aa14.85□□□□□ -0.03
CLN3-215ENST00000565236 FAM229AH3BQW9 127 aa14.85□□□□□ -0.03
CLN3-215ENST00000565236 CENPWQ5EE01 88 aa14.85□□□□□ -0.03
CLN3-215ENST00000565236 DNAJC30Q96LL9 226 aa14.85□□□□□ -0.03
CLN3-215ENST00000565236 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.84□□□□□ -0.03
CLN3-215ENST00000565236 C1QBP02746 253 aa14.84□□□□□ -0.03
CLN3-215ENST00000565236 SULT1A2P50226 295 aa14.84□□□□□ -0.03
CLN3-215ENST00000565236 VPS13BQ7Z7G8 4022 aa14.84□□□□□ -0.03
CLN3-215ENST00000565236 GNG4P50150 75 aa14.83□□□□□ -0.04
CLN3-215ENST00000565236 Q8N976 141 aa14.83□□□□□ -0.04
CLN3-215ENST00000565236 AP1S3Q96PC3 154 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms