RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 MRPS12O15235 138 aaKnown RBP2.84□□□□□ -1.95
VPS35-204ENST00000563884 PMP2P02689 132 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 SULT1A3P0DMM9 295 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 SULT1A4P0DMN0 295 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 AKR1C4P17516 323 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 ERCC8Q13216 396 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 ZNF266Q14584 549 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 SPHARQ15513 63 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 SURF2Q15527 256 aaPredicted RBP2.84□□□□□ -1.95
VPS35-204ENST00000563884 MPV17L2Q567V2 206 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 TMEM91Q6ZNR0 172 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 CYP2G1PQ6ZSU1 146 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 RAB2BQ8WUD1 216 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 CYGBQ8WWM9 190 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 LINC00167Q96N53 147 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 TP53RKQ96S44 253 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 KRTAP4-1Q9BYQ7 146 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 RPP21Q9H633 154 aaKnown RBP2.84□□□□□ -1.95
VPS35-204ENST00000563884 COPZ2Q9P299 210 aa2.84□□□□□ -1.95
VPS35-204ENST00000563884 A0A0G2JRQ6 117 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 A8MWV9 139 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 IGLC2P0DOY2 106 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 TBPP20226 339 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 PRR9Q5T870 116 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 Q6AWC8 147 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 EIF5AL1Q6IS14 154 aaKnown RBP2.83□□□□□ -1.96
VPS35-204ENST00000563884 LAIR2Q6ISS4 152 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 KRTAP26-1Q6PEX3 210 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 CLPSL2Q6UWE3 100 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 LINC00305Q7Z4B0 112 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 FAM107BQ9H098 131 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 ARL6Q9H0F7 186 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 AGPAT4-IT1Q9H0P7 198 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 ARV1Q9H2C2 271 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 ZNF492Q9P255 531 aa2.83□□□□□ -1.96
VPS35-204ENST00000563884 PAIP2BQ9ULR5 123 aaKnown RBP2.83□□□□□ -1.96
VPS35-204ENST00000563884 PIGBOS1A0A0B4J2F0 54 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 GYG2O15488 501 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 REG3AQ06141 175 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 PDE6HQ13956 83 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 TMEM97Q5BJF2 176 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 COX6B2Q6YFQ2 88 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 LINC00269Q8N2A0 174 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 LINC00304Q8N9R0 145 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 OR51S1Q8NGJ8 323 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 ZFAND1Q8TCF1 268 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 PTH2Q96A98 100 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 CIB3Q96Q77 187 aaPredicted RBP2.82□□□□□ -1.96
VPS35-204ENST00000563884 KIR2DL4Q99706 377 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 C9orf16Q9BUW7 83 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 DHRS4-AS1Q9P1J3 65 aa2.82□□□□□ -1.96
VPS35-204ENST00000563884 TRBV6-8A0A0A6YYG3 113 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 TRBV10-1A0A0K0K1A3 114 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 LOC107984640A0A0U1RRK4 108 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 SMCO3A2RU48 225 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 H3BTX0 84 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 M0R3E3 92 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 COX7A2P2O60397 106 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 CDS2O95674 445 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 PTTG1O95997 202 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 TYMSP04818 313 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 FGF6P10767 208 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 FHITP49789 147 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 S100A10P60903 97 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 FABP5Q01469 135 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 SS18Q15532 418 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 KRTAP19-2Q3LHN2 52 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 C15orf56Q8N910 161 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 ASB13Q8WXK3 278 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 CARD19Q96LW7 228 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 RBKSQ9H477 322 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 ANAPC10Q9UM13 185 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 PHLDA3Q9Y5J5 127 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 TIMM9Q9Y5J7 89 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 LENEPQ9Y5L5 61 aa2.81□□□□□ -1.96
VPS35-204ENST00000563884 IGKV2-40A0A087WW87 121 aaPredicted RBP2.8□□□□□ -1.96
VPS35-204ENST00000563884 GVQW2A0A096LPI5 108 aaPredicted RBP2.8□□□□□ -1.96
VPS35-204ENST00000563884 TRAV21A0A0B4J279 112 aa2.8□□□□□ -1.96
VPS35-204ENST00000563884 RBAKDNA6NC62 111 aa2.8□□□□□ -1.96
VPS35-204ENST00000563884 MED6O75586 246 aa2.8□□□□□ -1.96
VPS35-204ENST00000563884 IGKV2D-40P01614 121 aaPredicted RBP2.8□□□□□ -1.96
VPS35-204ENST00000563884 SNRPCP09234 159 aaKnown RBP2.8□□□□□ -1.96
VPS35-204ENST00000563884 MLLT11Q13015 90 aaPredicted RBP2.8□□□□□ -1.96
VPS35-204ENST00000563884 SMCO1Q147U7 214 aa2.8□□□□□ -1.96
VPS35-204ENST00000563884 SP6Q3SY56 376 aa2.8□□□□□ -1.96
VPS35-204ENST00000563884 C1orf146Q5VVC0 180 aa2.8□□□□□ -1.96
VPS35-204ENST00000563884 C10orf113Q5VZT2 155 aa2.8□□□□□ -1.96
VPS35-204ENST00000563884 C12orf45Q8N5I9 185 aaPredicted RBP2.8□□□□□ -1.96
VPS35-204ENST00000563884 OR2T35Q8NGX2 323 aa2.8□□□□□ -1.96
VPS35-204ENST00000563884 GPX8Q8TED1 209 aa2.8□□□□□ -1.96
VPS35-204ENST00000563884 S100A14Q9HCY8 104 aa2.8□□□□□ -1.96
VPS35-204ENST00000563884 COMMD3Q9UBI1 195 aa2.8□□□□□ -1.96
VPS35-204ENST00000563884 TRBV7-3A0A075B6L6 115 aa2.79□□□□□ -1.96
VPS35-204ENST00000563884 TRBV19A0A075B6N1 114 aa2.79□□□□□ -1.96
VPS35-204ENST00000563884 KRTAP4-16G5E9R7 235 aaPredicted RBP2.79□□□□□ -1.96
VPS35-204ENST00000563884 H3BQ15 152 aa2.79□□□□□ -1.96
VPS35-204ENST00000563884 K7EPK0 472 aa2.79□□□□□ -1.96
VPS35-204ENST00000563884 GOSR2O14653 212 aa2.79□□□□□ -1.96
VPS35-204ENST00000563884 CSN1S1P47710 185 aa2.79□□□□□ -1.96
VPS35-204ENST00000563884 RBX1P62877 108 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms