RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 HIST1H2BHQ93079 126 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 HIST1H2BNQ99877 126 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 HIST1H2BMQ99879 126 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 NDUFAF3Q9BU61 184 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 SAMD10Q9BYL1 202 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 RETNQ9HD89 108 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 NOP10Q9NPE3 64 aaKnown RBP9.72□□□□□ -0.85
VPS39-206ENST00000562662 TRGV1A0A0A0MS02 117 aa9.71□□□□□ -0.86
VPS39-206ENST00000562662 IGHV4-28A0A0C4DH34 117 aa9.71□□□□□ -0.86
VPS39-206ENST00000562662 CRYGDP07320 174 aa9.71□□□□□ -0.86
VPS39-206ENST00000562662 MIFP14174 115 aa9.71□□□□□ -0.86
VPS39-206ENST00000562662 LGALS9BQ3B8N2 356 aa9.71□□□□□ -0.86
VPS39-206ENST00000562662 Q6ZTI0 123 aa9.71□□□□□ -0.86
VPS39-206ENST00000562662 U3KQK5 164 aa9.71□□□□□ -0.86
VPS39-206ENST00000562662 TENM3Q9P273 2699 aa9.71□□□□□ -0.86
VPS39-206ENST00000562662 A0A087WWL8 130 aa9.7□□□□□ -0.86
VPS39-206ENST00000562662 A8MWV9 139 aa9.7□□□□□ -0.86
VPS39-206ENST00000562662 RS1O15537 224 aa9.7□□□□□ -0.86
VPS39-206ENST00000562662 SRIP30626 198 aa9.7□□□□□ -0.86
VPS39-206ENST00000562662 CFAP126Q5VTH2 177 aa9.7□□□□□ -0.86
VPS39-206ENST00000562662 UFSP1Q6NVU6 142 aa9.7□□□□□ -0.86
VPS39-206ENST00000562662 SBSPONQ8IVN8 264 aa9.7□□□□□ -0.86
VPS39-206ENST00000562662 ALKBH7Q9BT30 221 aaPredicted RBP9.7□□□□□ -0.86
VPS39-206ENST00000562662 D6R8Y8 96 aa9.69□□□□□ -0.86
VPS39-206ENST00000562662 SMKR1H3BMG3 65 aa9.69□□□□□ -0.86
VPS39-206ENST00000562662 MGPP08493 103 aa9.69□□□□□ -0.86
VPS39-206ENST00000562662 SMIM17P0DL12 118 aa9.69□□□□□ -0.86
VPS39-206ENST00000562662 DEFB121Q5J5C9 76 aa9.69□□□□□ -0.86
VPS39-206ENST00000562662 LINC00612Q8N6U2 182 aa9.69□□□□□ -0.86
VPS39-206ENST00000562662 TRAV26-2A0A0B4J265 109 aa9.68□□□□□ -0.86
VPS39-206ENST00000562662 GAS8-AS1O95177 125 aa9.68□□□□□ -0.86
VPS39-206ENST00000562662 NCR2O95944 276 aa9.68□□□□□ -0.86
VPS39-206ENST00000562662 CKS2P33552 79 aa9.68□□□□□ -0.86
VPS39-206ENST00000562662 EMP1P54849 157 aa9.68□□□□□ -0.86
VPS39-206ENST00000562662 FAM74A4Q5TZK3 123 aa9.68□□□□□ -0.86
VPS39-206ENST00000562662 ORMDL3Q8N138 153 aa9.68□□□□□ -0.86
VPS39-206ENST00000562662 TRAV4A0A0B4J268 109 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 GAGE12BA1L429 117 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 LYRM9A8MSI8 78 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 DEFB4AO15263 64 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 GAGE7O76087 117 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 PPBPP02775 128 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 GAGE12FP0CL80 117 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 GAGE12GP0CL81 117 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 GAGE12IP0CL82 117 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 GATA1P15976 413 aaPredicted RBP9.67□□□□□ -0.86
VPS39-206ENST00000562662 C18orf32Q8TCD1 76 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 MRAP2Q96G30 205 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 TM2D3Q9BRN9 247 aa9.67□□□□□ -0.86
VPS39-206ENST00000562662 RHODO00212 210 aa9.66□□□□□ -0.86
VPS39-206ENST00000562662 Q0VG73 95 aa9.66□□□□□ -0.86
VPS39-206ENST00000562662 ZNF56Q15929 161 aa9.66□□□□□ -0.86
VPS39-206ENST00000562662 FAM222AQ5U5X8 452 aa9.66□□□□□ -0.86
VPS39-206ENST00000562662 SUMO4Q6EEV6 95 aa9.66□□□□□ -0.86
VPS39-206ENST00000562662 ZFP2Q6ZN57 461 aa9.66□□□□□ -0.86
VPS39-206ENST00000562662 NRACQ8N912 160 aa9.66□□□□□ -0.86
VPS39-206ENST00000562662 MRAPQ8TCY5 172 aa9.66□□□□□ -0.86
VPS39-206ENST00000562662 PRELID3AQ96N28 172 aa9.66□□□□□ -0.86
VPS39-206ENST00000562662 DKK2Q9UBU2 259 aa9.66□□□□□ -0.86
VPS39-206ENST00000562662 PRKDCP78527 4128 aaKnown RBP9.66□□□□□ -0.86
VPS39-206ENST00000562662 NPYP01303 97 aa9.65□□□□□ -0.86
VPS39-206ENST00000562662 IQCJQ1A5X6 159 aa9.65□□□□□ -0.86
VPS39-206ENST00000562662 OR10J3Q5JRS4 329 aa9.65□□□□□ -0.86
VPS39-206ENST00000562662 OR4C5Q8NGB2 326 aa9.65□□□□□ -0.86
VPS39-206ENST00000562662 ZNF479Q96JC4 524 aa9.65□□□□□ -0.86
VPS39-206ENST00000562662 C18orf15Q96N68 181 aa9.65□□□□□ -0.86
VPS39-206ENST00000562662 SPATA25Q9BR10 227 aa9.65□□□□□ -0.86
VPS39-206ENST00000562662 EDA2RQ9HAV5 297 aa9.65□□□□□ -0.86
VPS39-206ENST00000562662 CELA1Q9UNI1 258 aa9.65□□□□□ -0.86
VPS39-206ENST00000562662 IGHV3-73A0A0B4J1V6 119 aa9.64□□□□□ -0.87
VPS39-206ENST00000562662 F5H697 171 aa9.64□□□□□ -0.87
VPS39-206ENST00000562662 NDUFA6P56556 154 aa9.64□□□□□ -0.87
VPS39-206ENST00000562662 C11orf68Q9H3H3 251 aaKnown RBP9.64□□□□□ -0.87
VPS39-206ENST00000562662 LAMTOR2Q9Y2Q5 125 aa9.64□□□□□ -0.87
VPS39-206ENST00000562662 TRGV2A0A075B6R0 118 aa9.63□□□□□ -0.87
VPS39-206ENST00000562662 M0QY20 66 aa9.63□□□□□ -0.87
VPS39-206ENST00000562662 TNFRSF6BO95407 300 aa9.63□□□□□ -0.87
VPS39-206ENST00000562662 IGHV3-53P01767 116 aa9.63□□□□□ -0.87
VPS39-206ENST00000562662 LINC00310P59036 64 aa9.63□□□□□ -0.87
VPS39-206ENST00000562662 COA6Q5JTJ3 125 aaKnown RBP9.63□□□□□ -0.87
VPS39-206ENST00000562662 Q6ZSN1 163 aa9.63□□□□□ -0.87
VPS39-206ENST00000562662 RPL39LQ96EH5 51 aaKnown RBP9.63□□□□□ -0.87
VPS39-206ENST00000562662 CIDEAO60543 219 aa9.62□□□□□ -0.87
VPS39-206ENST00000562662 DEFB130BP0DP73 79 aa9.62□□□□□ -0.87
VPS39-206ENST00000562662 DEFB130AP0DP74 79 aa9.62□□□□□ -0.87
VPS39-206ENST00000562662 URB1-AS1Q96HZ7 61 aa9.62□□□□□ -0.87
VPS39-206ENST00000562662 MEGF8Q7Z7M0 2845 aa9.61□□□□□ -0.87
VPS39-206ENST00000562662 C5orf52A6NGY3 159 aa9.61□□□□□ -0.87
VPS39-206ENST00000562662 PRSS47A8MTI9 375 aa9.61□□□□□ -0.87
VPS39-206ENST00000562662 S100A6P06703 90 aa9.61□□□□□ -0.87
VPS39-206ENST00000562662 SPART-AS1P0CW21 52 aa9.61□□□□□ -0.87
VPS39-206ENST00000562662 BAGE3Q86Y29 109 aa9.61□□□□□ -0.87
VPS39-206ENST00000562662 B9D2Q9BPU9 175 aa9.61□□□□□ -0.87
VPS39-206ENST00000562662 COL7A1Q02388 2944 aa9.6□□□□□ -0.87
VPS39-206ENST00000562662 TRBV6-5A0A0K0K1A5 114 aa9.6□□□□□ -0.87
VPS39-206ENST00000562662 TEX48A0A1B0GUV7 120 aa9.6□□□□□ -0.87
VPS39-206ENST00000562662 NUPR1O60356 82 aa9.6□□□□□ -0.87
VPS39-206ENST00000562662 SERF1AO75920 110 aa9.6□□□□□ -0.87
VPS39-206ENST00000562662 PPP1R17O96001 155 aa9.6□□□□□ -0.87
VPS39-206ENST00000562662 DAD1P61803 113 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms