RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CYSLTR1Q9Y271 337 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 TIMM8BQ9Y5J9 83 aaPredicted RBP5.55□□□□□ -1.52
VPS39-204ENST00000561818 VPS13CQ709C8 3753 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 TRBV10-1A0A0K0K1A3 114 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 TRBV27A0A0K0K1C4 114 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 LOC389332A0A1B0GUA5 103 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 SMIM9A6NGZ8 99 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 F5H697 171 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 GNRH2O43555 120 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 IGKV3-20P01619 116 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 ZNF56Q15929 161 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 SPATA45Q537H7 98 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 Q6ZN92 141 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 C18orf65Q6ZTR6 163 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 C14orf178Q8N769 122 aaPredicted RBP5.54□□□□□ -1.52
VPS39-204ENST00000561818 LINC00482Q8N8I6 264 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 KIR2DL5BQ8NHK3 375 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 URB1-AS1Q96HZ7 61 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 TMEM141Q96I45 108 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 MSRB1Q9NZV6 116 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 KIF25-AS1Q9Y6Z4 181 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 NOTCH2Q04721 2471 aa5.54□□□□□ -1.52
VPS39-204ENST00000561818 IGLV2-18A0A075B6J9 118 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 KNCNA6PVL3 124 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 NCR2O95944 276 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 LORP23490 312 aaPredicted RBP5.53□□□□□ -1.52
VPS39-204ENST00000561818 APOC4P55056 127 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 DAZ2Q13117 558 aaKnown RBP5.53□□□□□ -1.52
VPS39-204ENST00000561818 NSUN5P1Q3KNT7 163 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 Q71RC1 249 aaPredicted RBP5.53□□□□□ -1.52
VPS39-204ENST00000561818 ERASQ7Z444 233 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 BOD1L2Q8IYS8 172 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 RASL10AQ92737 203 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 TOMM6Q96B49 74 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 TIMM17AQ99595 171 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 CITED1Q99966 193 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 PAM16Q9Y3D7 125 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 CELSR1Q9NYQ6 3014 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 CSMD2Q7Z408 3487 aa5.53□□□□□ -1.52
VPS39-204ENST00000561818 TRAV12-2A0A075B6T6 113 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 MUC21A0A0G2JKD1 596 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 MUC21A0A140T8X8 626 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 TEX48A0A1B0GUV7 120 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 ADARB2-AS1A8MUL3 147 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 I3L3M4 83 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 M0R143 59 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 PRSS1P07477 247 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 EDN2P20800 178 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 SSTP61278 116 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 TMEM97Q5BJF2 176 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 MRPS16Q9Y3D3 137 aaKnown RBP5.52□□□□□ -1.53
VPS39-204ENST00000561818 MTORP42345 2549 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 HECTD1Q9ULT8 2610 aa5.52□□□□□ -1.53
VPS39-204ENST00000561818 TRAV4A0A0B4J268 109 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 SDHAF1A6NFY7 115 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 M0QY20 66 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 SIVA1O15304 175 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 DLEU1O43261 78 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 DPM2O94777 84 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 HNRNPA3P51991 378 aaKnown RBP5.51□□□□□ -1.53
VPS39-204ENST00000561818 POLR2KP53803 58 aaKnown RBP5.51□□□□□ -1.53
VPS39-204ENST00000561818 RIPPLY3P57055 190 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 HERVK_113P61574 105 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 RRN3P1Q2M238 152 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 SUMO4Q6EEV6 95 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 SLC25A34Q6PIV7 304 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 C12orf54Q6X4T0 127 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 C11orf44Q8N8P7 122 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 Q8N976 141 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 TMEM158Q8WZ71 300 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 SCGB3A1Q96QR1 104 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 CSTL1Q9H114 145 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 MDFICQ9P1T7 246 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 TNFRSF18Q9Y5U5 241 aa5.51□□□□□ -1.53
VPS39-204ENST00000561818 ACANP16112 2415 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 A0A096LNJ9 63 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 F8VRH5 84 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 SMKR1H3BMG3 65 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 RS1O15537 224 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 IGHV3-53P01767 116 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 IGKCP01834 107 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 CRYGDP07320 174 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 IGLC3P0DOY3 106 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 LINC00315P59091 139 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 DEFB1P60022 68 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 FAM74A4Q5TZK3 123 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 C2orf66Q6UXQ4 117 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 DAZ4Q86SG3 579 aaKnown RBP5.5□□□□□ -1.53
VPS39-204ENST00000561818 LINC00528Q8N1L1 170 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 WFDC9Q8NEX5 89 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 IL17DQ8TAD2 202 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 RNASE8Q8TDE3 154 aaKnown RBP5.5□□□□□ -1.53
VPS39-204ENST00000561818 C18orf15Q96N68 181 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 SMR3AQ99954 134 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 ZMAT4Q9H898 229 aa5.5□□□□□ -1.53
VPS39-204ENST00000561818 DAZ3Q9NR90 486 aaKnown RBP5.5□□□□□ -1.53
VPS39-204ENST00000561818 SVEP1Q4LDE5 3571 aa5.49□□□□□ -1.53
VPS39-204ENST00000561818 NSD1Q96L73 2696 aaPredicted RBP5.49□□□□□ -1.53
VPS39-204ENST00000561818 A0A087WX48 190 aa5.49□□□□□ -1.53
VPS39-204ENST00000561818 RPL36AP83881 106 aaKnown RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms