RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 S100A4P26447 101 aaKnown RBP10.66□□□□□ -0.7
CLN3-208ENST00000561505 AQP10Q96PS8 301 aa10.66□□□□□ -0.7
CLN3-208ENST00000561505 ARMS2P0C7Q2 107 aa10.65□□□□□ -0.7
CLN3-208ENST00000561505 HSD17B11Q8NBQ5 300 aa10.65□□□□□ -0.7
CLN3-208ENST00000561505 URGCP-MRPS24S4R325 110 aa10.65□□□□□ -0.7
CLN3-208ENST00000561505 TRAV34A0A0B4J273 112 aa10.64□□□□□ -0.71
CLN3-208ENST00000561505 UBE2D3P61077 147 aa10.64□□□□□ -0.71
CLN3-208ENST00000561505 UBE2D2P62837 147 aa10.64□□□□□ -0.71
CLN3-208ENST00000561505 Q0VG73 95 aa10.64□□□□□ -0.71
CLN3-208ENST00000561505 OR10G8Q8NGN5 311 aa10.64□□□□□ -0.71
CLN3-208ENST00000561505 UBE2WQ96B02 151 aa10.64□□□□□ -0.71
CLN3-208ENST00000561505 ACTR3CQ9C0K3 210 aaPredicted RBP10.64□□□□□ -0.71
CLN3-208ENST00000561505 B4DEV8 164 aa10.63□□□□□ -0.71
CLN3-208ENST00000561505 C14orf177Q52M58 125 aa10.63□□□□□ -0.71
CLN3-208ENST00000561505 ENHOQ6UWT2 76 aa10.63□□□□□ -0.71
CLN3-208ENST00000561505 Q86TA4 180 aa10.63□□□□□ -0.71
CLN3-208ENST00000561505 A0A087WX48 190 aa10.62□□□□□ -0.71
CLN3-208ENST00000561505 H3BVH4 76 aa10.62□□□□□ -0.71
CLN3-208ENST00000561505 ZNF726P1Q15940 193 aa10.62□□□□□ -0.71
CLN3-208ENST00000561505 OR11H4Q8NGC9 324 aa10.62□□□□□ -0.71
CLN3-208ENST00000561505 HIST1H2BAQ96A08 127 aa10.62□□□□□ -0.71
CLN3-208ENST00000561505 ZC2HC1AQ96GY0 325 aa10.62□□□□□ -0.71
CLN3-208ENST00000561505 NKX6-2Q9C056 277 aaPredicted RBP10.62□□□□□ -0.71
CLN3-208ENST00000561505 ZFP30Q9Y2G7 519 aa10.62□□□□□ -0.71
CLN3-208ENST00000561505 TRBV7-3A0A075B6L6 115 aa10.61□□□□□ -0.71
CLN3-208ENST00000561505 TRBV6-1A0A0K0K1D8 114 aa10.61□□□□□ -0.71
CLN3-208ENST00000561505 PEX7O00628 323 aa10.61□□□□□ -0.71
CLN3-208ENST00000561505 ZNF674Q2M3X9 581 aa10.61□□□□□ -0.71
CLN3-208ENST00000561505 LINC01559Q495D7 138 aa10.61□□□□□ -0.71
CLN3-208ENST00000561505 DAZAP1Q96EP5 407 aaKnown RBP10.61□□□□□ -0.71
CLN3-208ENST00000561505 PLA2G2DQ9UNK4 145 aa10.61□□□□□ -0.71
CLN3-208ENST00000561505 TRBV6-8A0A0A6YYG3 113 aa10.6□□□□□ -0.71
CLN3-208ENST00000561505 HNRNPA3P51991 378 aaKnown RBP10.6□□□□□ -0.71
CLN3-208ENST00000561505 DGAT2L7PQ6IED9 249 aa10.6□□□□□ -0.71
CLN3-208ENST00000561505 PRR27Q6MZM9 219 aa10.6□□□□□ -0.71
CLN3-208ENST00000561505 A0A087WWL8 130 aa10.59□□□□□ -0.71
CLN3-208ENST00000561505 FAM74A7A6NL05 159 aa10.59□□□□□ -0.71
CLN3-208ENST00000561505 SH2D1AO60880 128 aa10.59□□□□□ -0.71
CLN3-208ENST00000561505 DEFA1P59665 94 aa10.59□□□□□ -0.71
CLN3-208ENST00000561505 DEFA3P59666 94 aa10.59□□□□□ -0.71
CLN3-208ENST00000561505 RPL36AP83881 106 aaKnown RBP10.59□□□□□ -0.71
CLN3-208ENST00000561505 FAM74A4Q5TZK3 123 aa10.59□□□□□ -0.71
CLN3-208ENST00000561505 KRTAP26-1Q6PEX3 210 aa10.59□□□□□ -0.71
CLN3-208ENST00000561505 C9orf163Q8N9P6 203 aa10.59□□□□□ -0.71
CLN3-208ENST00000561505 RPL36ALQ969Q0 106 aaKnown RBP10.59□□□□□ -0.71
CLN3-208ENST00000561505 CTXND1A0A1B0GTU2 59 aa10.58□□□□□ -0.72
CLN3-208ENST00000561505 GRIFINA4D1Z8 144 aa10.58□□□□□ -0.72
CLN3-208ENST00000561505 MT1HL1P0DM35 61 aa10.58□□□□□ -0.72
CLN3-208ENST00000561505 FAM162BQ5T6X4 162 aa10.58□□□□□ -0.72
CLN3-208ENST00000561505 C1orf43Q9BWL3 253 aa10.58□□□□□ -0.72
CLN3-208ENST00000561505 PRR34Q9NV39 138 aa10.58□□□□□ -0.72
CLN3-208ENST00000561505 PHLDA3Q9Y5J5 127 aa10.58□□□□□ -0.72
CLN3-208ENST00000561505 A6NHS1 94 aa10.57□□□□□ -0.72
CLN3-208ENST00000561505 M0R036 132 aa10.57□□□□□ -0.72
CLN3-208ENST00000561505 IFNA7P01567 189 aa10.57□□□□□ -0.72
CLN3-208ENST00000561505 PRSS1P07477 247 aa10.57□□□□□ -0.72
CLN3-208ENST00000561505 TPT1P13693 172 aaKnown RBP10.57□□□□□ -0.72
CLN3-208ENST00000561505 RAB4BP61018 213 aa10.57□□□□□ -0.72
CLN3-208ENST00000561505 RPL37AP61513 92 aaKnown RBP10.57□□□□□ -0.72
CLN3-208ENST00000561505 ZFP82Q8N141 532 aa10.57□□□□□ -0.72
CLN3-208ENST00000561505 FMC1Q96HJ9 113 aa10.57□□□□□ -0.72
CLN3-208ENST00000561505 USP17L23D6RBM5 183 aa10.56□□□□□ -0.72
CLN3-208ENST00000561505 LTAP01374 205 aa10.56□□□□□ -0.72
CLN3-208ENST00000561505 FHITP49789 147 aa10.56□□□□□ -0.72
CLN3-208ENST00000561505 MIAQ16674 131 aa10.56□□□□□ -0.72
CLN3-208ENST00000561505 MPV17L2Q567V2 206 aa10.56□□□□□ -0.72
CLN3-208ENST00000561505 Q5BKY6 102 aa10.56□□□□□ -0.72
CLN3-208ENST00000561505 NEXN-AS1Q8NBZ9 246 aa10.56□□□□□ -0.72
CLN3-208ENST00000561505 VAX2Q9UIW0 290 aa10.56□□□□□ -0.72
CLN3-208ENST00000561505 ALG5Q9Y673 324 aa10.56□□□□□ -0.72
CLN3-208ENST00000561505 M0R381 172 aa10.55□□□□□ -0.72
CLN3-208ENST00000561505 CXCL1P09341 107 aa10.55□□□□□ -0.72
CLN3-208ENST00000561505 CIRBPQ14011 172 aaKnown RBP10.55□□□□□ -0.72
CLN3-208ENST00000561505 RPL7L1Q6DKI1 246 aaKnown RBP10.55□□□□□ -0.72
CLN3-208ENST00000561505 KCNIP4Q6PIL6 250 aa10.55□□□□□ -0.72
CLN3-208ENST00000561505 SDIM1Q6ZPB5 146 aa10.55□□□□□ -0.72
CLN3-208ENST00000561505 TCEAL7Q9BRU2 100 aa10.55□□□□□ -0.72
CLN3-208ENST00000561505 SSBP4Q9BWG4 385 aaPredicted RBP10.55□□□□□ -0.72
CLN3-208ENST00000561505 UBE2G2P60604 165 aa10.54□□□□□ -0.72
CLN3-208ENST00000561505 PKIAP61925 76 aa10.54□□□□□ -0.72
CLN3-208ENST00000561505 NTM-AS1Q6ZSK4 140 aa10.54□□□□□ -0.72
CLN3-208ENST00000561505 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.54□□□□□ -0.72
CLN3-208ENST00000561505 PANO1I0J062 215 aa10.53□□□□□ -0.72
CLN3-208ENST00000561505 RPL19P84098 196 aaKnown RBP10.53□□□□□ -0.72
CLN3-208ENST00000561505 C15orf54Q8N8G6 183 aa10.53□□□□□ -0.72
CLN3-208ENST00000561505 TMEM262E9PQX1 116 aa10.52□□□□□ -0.73
CLN3-208ENST00000561505 SNAI2O43623 268 aa10.52□□□□□ -0.73
CLN3-208ENST00000561505 CRPP02741 224 aa10.52□□□□□ -0.73
CLN3-208ENST00000561505 Q6ZRU5 148 aa10.52□□□□□ -0.73
CLN3-208ENST00000561505 ANGP03950 147 aaKnown RBP10.51□□□□□ -0.73
CLN3-208ENST00000561505 GIPP09681 153 aaPredicted RBP10.51□□□□□ -0.73
CLN3-208ENST00000561505 TMEM97Q5BJF2 176 aa10.51□□□□□ -0.73
CLN3-208ENST00000561505 MLST8Q9BVC4 326 aa10.51□□□□□ -0.73
CLN3-208ENST00000561505 KIF25-AS1Q9Y6Z4 181 aa10.51□□□□□ -0.73
CLN3-208ENST00000561505 TMSB15BA0A087X1C1 80 aa10.5□□□□□ -0.73
CLN3-208ENST00000561505 BORCS7-ASMTA0A0B4J1R7 106 aa10.5□□□□□ -0.73
CLN3-208ENST00000561505 PTTG1O95997 202 aa10.5□□□□□ -0.73
CLN3-208ENST00000561505 OR5AL1P0C617 328 aa10.5□□□□□ -0.73
CLN3-208ENST00000561505 UBE2G1P62253 170 aa10.5□□□□□ -0.73
CLN3-208ENST00000561505 CNBPP62633 177 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms