RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 NUDT3O95989 172 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 GATA1P15976 413 aaPredicted RBP7.07□□□□□ -1.28
USP3-216ENST00000559873 ADCYAP1P18509 176 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 CRYBA4P53673 196 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 FOXA3P55318 350 aaPredicted RBP7.07□□□□□ -1.28
USP3-216ENST00000559873 TWIST1Q15672 202 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 ZNF56Q15929 161 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 POM121L12Q8N7R1 296 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 GTSF1Q8WW33 167 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 APLNQ9ULZ1 77 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 ICOSQ9Y6W8 199 aa7.07□□□□□ -1.28
USP3-216ENST00000559873 DYNC2H1Q8NCM8 4307 aaKnown RBP7.07□□□□□ -1.28
USP3-216ENST00000559873 A0A087WWL8 130 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 IGHV3-73A0A0B4J1V6 119 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 A0A1B0GUT8 65 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 K7EQD1 137 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 S100A8P05109 93 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 P0DMU3 169 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 FAM231AP0DMU4 169 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 FAM231CP0DMU5 169 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 SRIP30626 198 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 SSTP61278 116 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 MRPL23Q16540 153 aaKnown RBP7.06□□□□□ -1.28
USP3-216ENST00000559873 RNF212Q495C1 297 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 SH2D6Q7Z4S9 175 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 UBE2DNLQ8IWF7 75 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 PGLYRP4Q96LB8 373 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 DPH3P1Q9H4G8 78 aa7.06□□□□□ -1.28
USP3-216ENST00000559873 CARHSP1Q9Y2V2 147 aaKnown RBP7.06□□□□□ -1.28
USP3-216ENST00000559873 SMIM27A0A1W2PRY6 76 aa7.05□□□□□ -1.28
USP3-216ENST00000559873 F5H697 171 aa7.05□□□□□ -1.28
USP3-216ENST00000559873 H7C1H1 209 aa7.05□□□□□ -1.28
USP3-216ENST00000559873 MGPP08493 103 aa7.05□□□□□ -1.28
USP3-216ENST00000559873 GYPEP15421 78 aa7.05□□□□□ -1.28
USP3-216ENST00000559873 NTF3P20783 257 aa7.05□□□□□ -1.28
USP3-216ENST00000559873 RAB4BP61018 213 aa7.05□□□□□ -1.28
USP3-216ENST00000559873 RIGQ13278 110 aa7.05□□□□□ -1.28
USP3-216ENST00000559873 C14orf178Q8N769 122 aaPredicted RBP7.05□□□□□ -1.28
USP3-216ENST00000559873 VSIG2Q96IQ7 327 aa7.05□□□□□ -1.28
USP3-216ENST00000559873 CTDSP1Q9GZU7 261 aa7.05□□□□□ -1.28
USP3-216ENST00000559873 JPT2Q9H910 190 aa7.05□□□□□ -1.28
USP3-216ENST00000559873 PLECQ15149 4684 aaKnown RBP7.05□□□□□ -1.28
USP3-216ENST00000559873 TRBV10-1A0A0K0K1A3 114 aa7.04□□□□□ -1.28
USP3-216ENST00000559873 A0A1B0GW15 77 aa7.04□□□□□ -1.28
USP3-216ENST00000559873 CRYGDP07320 174 aa7.04□□□□□ -1.28
USP3-216ENST00000559873 CCL18P55774 89 aa7.04□□□□□ -1.28
USP3-216ENST00000559873 RHEBQ15382 184 aa7.04□□□□□ -1.28
USP3-216ENST00000559873 C10orf91Q5T1B1 145 aa7.04□□□□□ -1.28
USP3-216ENST00000559873 LGALS9CQ6DKI2 356 aa7.04□□□□□ -1.28
USP3-216ENST00000559873 UFSP1Q6NVU6 142 aa7.04□□□□□ -1.28
USP3-216ENST00000559873 SLC25A29Q8N8R3 303 aa7.04□□□□□ -1.28
USP3-216ENST00000559873 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.04□□□□□ -1.28
USP3-216ENST00000559873 NUP35Q8NFH5 326 aa7.04□□□□□ -1.28
USP3-216ENST00000559873 SAMD10Q9BYL1 202 aa7.04□□□□□ -1.28
USP3-216ENST00000559873 SNAPINO95295 136 aa7.03□□□□□ -1.28
USP3-216ENST00000559873 EVI2AP22794 236 aa7.03□□□□□ -1.28
USP3-216ENST00000559873 FAM3BP58499 235 aaPredicted RBP7.03□□□□□ -1.28
USP3-216ENST00000559873 KCNIP4Q6PIL6 250 aa7.03□□□□□ -1.28
USP3-216ENST00000559873 NEGR1Q7Z3B1 354 aa7.03□□□□□ -1.28
USP3-216ENST00000559873 ATP5L2Q7Z4Y8 100 aa7.03□□□□□ -1.28
USP3-216ENST00000559873 SVBPQ8N300 66 aa7.03□□□□□ -1.28
USP3-216ENST00000559873 LINC00476Q8WZB0 136 aa7.03□□□□□ -1.28
USP3-216ENST00000559873 ALMS1Q8TCU4 4167 aa7.03□□□□□ -1.28
USP3-216ENST00000559873 NACAE9PAV3 2078 aa7.02□□□□□ -1.29
USP3-216ENST00000559873 TENM2Q9NT68 2774 aa7.02□□□□□ -1.29
USP3-216ENST00000559873 APOC3P02656 99 aa7.02□□□□□ -1.29
USP3-216ENST00000559873 S100PP25815 95 aa7.02□□□□□ -1.29
USP3-216ENST00000559873 RPL36AP83881 106 aaKnown RBP7.02□□□□□ -1.29
USP3-216ENST00000559873 RPL36ALQ969Q0 106 aaKnown RBP7.02□□□□□ -1.29
USP3-216ENST00000559873 IMMP2LQ96T52 175 aa7.02□□□□□ -1.29
USP3-216ENST00000559873 MSRB1Q9NZV6 116 aa7.02□□□□□ -1.29
USP3-216ENST00000559873 A0A087WWC5 75 aa7.01□□□□□ -1.29
USP3-216ENST00000559873 A0A096LPF7 62 aa7.01□□□□□ -1.29
USP3-216ENST00000559873 LCE6AA0A183 80 aa7.01□□□□□ -1.29
USP3-216ENST00000559873 LY6G6CO95867 125 aa7.01□□□□□ -1.29
USP3-216ENST00000559873 HBBP68871 147 aa7.01□□□□□ -1.29
USP3-216ENST00000559873 CLRN3Q8NCR9 226 aa7.01□□□□□ -1.29
USP3-216ENST00000559873 FRZBQ92765 325 aa7.01□□□□□ -1.29
USP3-216ENST00000559873 TMEM191AQ9H0A3 160 aa7.01□□□□□ -1.29
USP3-216ENST00000559873 TMEM242Q9NWH2 141 aa7.01□□□□□ -1.29
USP3-216ENST00000559873 KIF25-AS1Q9Y6Z4 181 aa7.01□□□□□ -1.29
USP3-216ENST00000559873 TRAV9-1A0A075B6T8 112 aa7□□□□□ -1.29
USP3-216ENST00000559873 C7orf77A4D0Y5 90 aa7□□□□□ -1.29
USP3-216ENST00000559873 GAGE12JA6NER3 117 aa7□□□□□ -1.29
USP3-216ENST00000559873 CAMPP49913 170 aa7□□□□□ -1.29
USP3-216ENST00000559873 GAGE1Q13065 139 aa7□□□□□ -1.29
USP3-216ENST00000559873 GAGE4Q13068 117 aa7□□□□□ -1.29
USP3-216ENST00000559873 GAGE5Q13069 117 aa7□□□□□ -1.29
USP3-216ENST00000559873 GAGE13Q4V321 117 aa7□□□□□ -1.29
USP3-216ENST00000559873 SUMO4Q6EEV6 95 aa7□□□□□ -1.29
USP3-216ENST00000559873 MRPL54Q6P161 138 aaKnown RBP7□□□□□ -1.29
USP3-216ENST00000559873 Q6ZSN1 163 aa7□□□□□ -1.29
USP3-216ENST00000559873 BTF3L4Q96K17 158 aa7□□□□□ -1.29
USP3-216ENST00000559873 DNAJC30Q96LL9 226 aa7□□□□□ -1.29
USP3-216ENST00000559873 RPS10P5Q9NQ39 176 aa7□□□□□ -1.29
USP3-216ENST00000559873 TRBV7-3A0A075B6L6 115 aa6.99□□□□□ -1.29
USP3-216ENST00000559873 LOC100131303A0A0U1RQF7 123 aa6.99□□□□□ -1.29
USP3-216ENST00000559873 LINC00694P0DN24 101 aa6.99□□□□□ -1.29
USP3-216ENST00000559873 TIRAPP58753 221 aa6.99□□□□□ -1.29
USP3-216ENST00000559873 LINC00315P59091 139 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms