RNA–Protein interactions for RNA: ENST00000559193.5

SPG11-215, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 2,579 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-215ENST00000559193 ZNF688P0C7X2 276 aa12.34□□□□□ -0.43
SPG11-215ENST00000559193 PMVKQ15126 192 aa12.34□□□□□ -0.43
SPG11-215ENST00000559193 SAMD13Q5VXD3 122 aa12.34□□□□□ -0.43
SPG11-215ENST00000559193 C10orf99Q6UWK7 81 aa12.34□□□□□ -0.43
SPG11-215ENST00000559193 C9orf85Q96MD7 179 aa12.34□□□□□ -0.43
SPG11-215ENST00000559193 IGHV3-16A0A0C4DH30 117 aa12.34□□□□□ -0.43
SPG11-215ENST00000559193 HOXA3O43365 443 aaPredicted RBP12.34□□□□□ -0.43
SPG11-215ENST00000559193 KIR2DL4Q99706 377 aa12.34□□□□□ -0.43
SPG11-215ENST00000559193 PRO0461Q9UI25 63 aa12.34□□□□□ -0.43
SPG11-215ENST00000559193 MTURNQ8N3F0 131 aa12.33□□□□□ -0.43
SPG11-215ENST00000559193 PGPEP1Q9NXJ5 209 aa12.33□□□□□ -0.43
SPG11-215ENST00000559193 ZNF580Q9UK33 172 aa12.33□□□□□ -0.43
SPG11-215ENST00000559193 TRAV12-2A0A075B6T6 113 aa12.33□□□□□ -0.44
SPG11-215ENST00000559193 LINC01549A6NIU2 74 aa12.33□□□□□ -0.44
SPG11-215ENST00000559193 TMEM238C9JI98 176 aa12.33□□□□□ -0.44
SPG11-215ENST00000559193 FAM74A4Q5TZK3 123 aa12.33□□□□□ -0.44
SPG11-215ENST00000559193 TMEM141Q96I45 108 aa12.33□□□□□ -0.44
SPG11-215ENST00000559193 TIMM17AQ99595 171 aa12.33□□□□□ -0.44
SPG11-215ENST00000559193 MDFICQ9P1T7 246 aa12.33□□□□□ -0.44
SPG11-215ENST00000559193 TRBV6-5A0A0K0K1A5 114 aa12.32□□□□□ -0.44
SPG11-215ENST00000559193 TRBV27A0A0K0K1C4 114 aa12.32□□□□□ -0.44
SPG11-215ENST00000559193 IGKV3-20P01619 116 aa12.32□□□□□ -0.44
SPG11-215ENST00000559193 PAPPA-AS1Q5QFB9 102 aa12.32□□□□□ -0.44
SPG11-215ENST00000559193 SH2D6Q7Z4S9 175 aa12.32□□□□□ -0.44
SPG11-215ENST00000559193 A0A0J9YX75 114 aa12.32□□□□□ -0.44
SPG11-215ENST00000559193 UBE2D1P51668 147 aa12.32□□□□□ -0.44
SPG11-215ENST00000559193 GAGE13Q4V321 117 aa12.32□□□□□ -0.44
SPG11-215ENST00000559193 ODF3Q96PU9 254 aa12.32□□□□□ -0.44
SPG11-215ENST00000559193 TSPEAR-AS2P59090 65 aa12.31□□□□□ -0.44
SPG11-215ENST00000559193 HERVK_113P61574 105 aa12.31□□□□□ -0.44
SPG11-215ENST00000559193 IGHV4-59P01825 116 aa12.31□□□□□ -0.44
SPG11-215ENST00000559193 SRSF9Q13242 221 aaKnown RBP eCLIP12.31□□□□□ -0.44
SPG11-215ENST00000559193 ETDBQ3ZM63 59 aa12.31□□□□□ -0.44
SPG11-215ENST00000559193 ZNRF2Q8NHG8 242 aa12.31□□□□□ -0.44
SPG11-215ENST00000559193 A0A0J9YY99 117 aa12.3□□□□□ -0.44
SPG11-215ENST00000559193 TMEM238LA0A1B0GVL6 79 aa12.3□□□□□ -0.44
SPG11-215ENST00000559193 A6NJY4 79 aa12.3□□□□□ -0.44
SPG11-215ENST00000559193 B4DSR2 109 aa12.3□□□□□ -0.44
SPG11-215ENST00000559193 Q8N1Y9 231 aa12.3□□□□□ -0.44
SPG11-215ENST00000559193 MRPL16Q9NX20 251 aaKnown RBP12.3□□□□□ -0.44
SPG11-215ENST00000559193 ZNF256Q9Y2P7 627 aaPredicted RBP12.3□□□□□ -0.44
SPG11-215ENST00000559193 K7EQG2 157 aa12.29□□□□□ -0.44
SPG11-215ENST00000559193 M0QY20 66 aa12.29□□□□□ -0.44
SPG11-215ENST00000559193 ZNF876PQ49A33 203 aa12.29□□□□□ -0.44
SPG11-215ENST00000559193 ZNF56Q15929 161 aa12.29□□□□□ -0.44
SPG11-215ENST00000559193 DEFB112Q30KQ8 113 aa12.29□□□□□ -0.44
SPG11-215ENST00000559193 TSPAN13O95857 204 aa12.28□□□□□ -0.44
SPG11-215ENST00000559193 SNRPD3P62318 126 aaKnown RBP12.28□□□□□ -0.44
SPG11-215ENST00000559193 SPINK13Q1W4C9 94 aa12.28□□□□□ -0.44
SPG11-215ENST00000559193 TMEM170BQ5T4T1 132 aa12.28□□□□□ -0.44
SPG11-215ENST00000559193 SYT8Q8NBV8 401 aa12.28□□□□□ -0.44
SPG11-215ENST00000559193 SPAG8Q99932 426 aaPredicted RBP12.28□□□□□ -0.44
SPG11-215ENST00000559193 TSSC4Q9Y5U2 329 aaPredicted RBP12.28□□□□□ -0.44
SPG11-215ENST00000559193 IGHV1OR15-1A0A075B7D0 117 aa12.27□□□□□ -0.44
SPG11-215ENST00000559193 NSUN5P1Q3KNT7 163 aa12.27□□□□□ -0.45
SPG11-215ENST00000559193 AMELXQ99217 191 aa12.27□□□□□ -0.45
SPG11-215ENST00000559193 OPRPNQ99935 248 aaPredicted RBP12.26□□□□□ -0.45
SPG11-215ENST00000559193 SPG11Q96JI7 2443 aa12.26□□□□□ -0.45
SPG11-215ENST00000559193 APOMO95445 188 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 SYNJ2BPP57105 145 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 RHOHQ15669 191 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 SFTA2Q6UW10 78 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 TMEM89A2RUT3 159 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 J3QR89 54 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 IGHV3-30P01768 117 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 P0DMU3 169 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 FAM231AP0DMU4 169 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 FAM231CP0DMU5 169 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 IGHV3-30-5P0DP03 117 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 INSL3P51460 131 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 TRPT1Q86TN4 253 aaKnown RBP12.25□□□□□ -0.45
SPG11-215ENST00000559193 NFE4Q86UQ8 179 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 NDUFA11Q86Y39 141 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 NRGNQ92686 78 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 DLX4Q92988 240 aaPredicted RBP12.25□□□□□ -0.45
SPG11-215ENST00000559193 GATA3P23771 443 aa12.25□□□□□ -0.45
SPG11-215ENST00000559193 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.24□□□□□ -0.451e-6■■■■■ 28.5
SPG11-215ENST00000559193 GAGE12HA6NDE8 117 aa12.24□□□□□ -0.45
SPG11-215ENST00000559193 SMCPP49901 116 aaPredicted RBP12.24□□□□□ -0.45
SPG11-215ENST00000559193 UBE2D3P61077 147 aa12.24□□□□□ -0.45
SPG11-215ENST00000559193 UBE2D2P62837 147 aa12.24□□□□□ -0.45
SPG11-215ENST00000559193 CFAP126Q5VTH2 177 aa12.24□□□□□ -0.45
SPG11-215ENST00000559193 SLC25A29Q8N8R3 303 aa12.24□□□□□ -0.45
SPG11-215ENST00000559193 GTSF1LQ9H1H1 148 aa12.24□□□□□ -0.45
SPG11-215ENST00000559193 CELSR2Q9HCU4 2923 aa12.24□□□□□ -0.45
SPG11-215ENST00000559193 J3QQQ9 107 aa12.24□□□□□ -0.45
SPG11-215ENST00000559193 DUX5Q96PT3 197 aa12.24□□□□□ -0.45
SPG11-215ENST00000559193 LOC107984156A0A0G2JMH3 177 aa12.23□□□□□ -0.45
SPG11-215ENST00000559193 AZU1P20160 251 aa12.23□□□□□ -0.45
SPG11-215ENST00000559193 ARL17AQ8IVW1 177 aa12.23□□□□□ -0.45
SPG11-215ENST00000559193 CSPG4Q6UVK1 2322 aa12.23□□□□□ -0.45
SPG11-215ENST00000559193 C20orf203Q8NBC4 194 aa12.23□□□□□ -0.45
SPG11-215ENST00000559193 SPATA25Q9BR10 227 aa12.23□□□□□ -0.45
SPG11-215ENST00000559193 PKD1L2Q7Z442 2459 aa12.22□□□□□ -0.45
SPG11-215ENST00000559193 SIGMAR1Q99720 223 aa12.22□□□□□ -0.45
SPG11-215ENST00000559193 CFC1BP0CG36 223 aa12.22□□□□□ -0.45
SPG11-215ENST00000559193 CFC1P0CG37 223 aa12.22□□□□□ -0.45
SPG11-215ENST00000559193 LGALS3P17931 250 aaKnown RBP12.22□□□□□ -0.45
SPG11-215ENST00000559193 PSMB2P49721 201 aa12.22□□□□□ -0.45
SPG11-215ENST00000559193 CFAP46Q8IYW2 2715 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms