RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 IGHV1-8P0DP01 117 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 ZFP36P26651 326 aaKnown RBP8.3□□□□□ -1.08
USP3-206ENST00000558157 DLX1P56177 255 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 LMO4P61968 165 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 IMUPQ9GZP8 106 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 PTPN13Q12923 2485 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 ARHGAP32A7KAX9 2087 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 IGHV1-69DA0A0B4J2H0 117 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 H3BMM0 161 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 TIMM23O14925 209 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 IGHV3-33P01772 117 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 TRGV3P03979 118 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 PRB3Q04118 309 aaPredicted RBP8.29□□□□□ -1.08
USP3-206ENST00000558157 LINC01620Q4KN68 170 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 Q6ZQT7 251 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 UBE2WQ96B02 151 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 CSMD2Q7Z408 3487 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 VPS13CQ709C8 3753 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 ANKRD17O75179 2603 aaKnown RBP8.29□□□□□ -1.08
USP3-206ENST00000558157 POLQO75417 2590 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 IGHV4-61A0A0C4DH41 118 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 PPP1R17O96001 155 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 SUMO2P61956 95 aaKnown RBP8.29□□□□□ -1.08
USP3-206ENST00000558157 LINC01587Q99440 93 aa8.29□□□□□ -1.08
USP3-206ENST00000558157 ABCA12Q86UK0 2595 aa8.28□□□□□ -1.08
USP3-206ENST00000558157 ASH1LQ9NR48 2969 aaKnown RBP8.28□□□□□ -1.08
USP3-206ENST00000558157 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.28□□□□□ -1.08
USP3-206ENST00000558157 M0R2P5 195 aa8.28□□□□□ -1.08
USP3-206ENST00000558157 SCGB2A1O75556 95 aa8.28□□□□□ -1.08
USP3-206ENST00000558157 C2orf66Q6UXQ4 117 aa8.28□□□□□ -1.08
USP3-206ENST00000558157 IGKV3D-20A0A0C4DH25 116 aa8.28□□□□□ -1.08
USP3-206ENST00000558157 IGHV7-4-1A0A0J9YVY3 117 aa8.28□□□□□ -1.08
USP3-206ENST00000558157 M0R381 172 aa8.28□□□□□ -1.08
USP3-206ENST00000558157 PPDPFQ9H3Y8 114 aa8.28□□□□□ -1.08
USP3-206ENST00000558157 ABCA2Q9BZC7 2435 aa8.27□□□□□ -1.08
USP3-206ENST00000558157 C11orf86A6NJI1 115 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 H3BT86 120 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 MFAP4P55083 255 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 DEFB113Q30KQ7 82 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 TMEM263Q8WUH6 116 aaKnown RBP8.27□□□□□ -1.09
USP3-206ENST00000558157 CFHR4Q92496 578 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 BEX4Q9NWD9 120 aaPredicted RBP8.27□□□□□ -1.09
USP3-206ENST00000558157 IGHV3-72A0A0B4J1Y9 119 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 COX7A1P24310 79 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 CNTFRP26992 372 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 ID1P41134 155 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 CRIP2P52943 208 aaPredicted RBP8.27□□□□□ -1.09
USP3-206ENST00000558157 DSCR9P59020 149 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 DEFB121Q5J5C9 76 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 SPANXN1Q5VSR9 72 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 TRPT1Q86TN4 253 aaKnown RBP8.27□□□□□ -1.09
USP3-206ENST00000558157 KLHL30-AS1Q8NEE0 82 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 CSDC2Q9Y534 153 aaKnown RBP8.27□□□□□ -1.09
USP3-206ENST00000558157 APCP25054 2843 aa8.27□□□□□ -1.09
USP3-206ENST00000558157 TRAV26-2A0A0B4J265 109 aa8.26□□□□□ -1.09
USP3-206ENST00000558157 TRBV30A0A0K0K1B3 111 aa8.26□□□□□ -1.09
USP3-206ENST00000558157 M0R1W7 72 aa8.26□□□□□ -1.09
USP3-206ENST00000558157 TGFAP01135 160 aa8.26□□□□□ -1.09
USP3-206ENST00000558157 ATP5G1P05496 136 aa8.26□□□□□ -1.09
USP3-206ENST00000558157 TMEM101Q96IK0 257 aa8.26□□□□□ -1.09
USP3-206ENST00000558157 IGHV1-3A0A0C4DH29 117 aa8.25□□□□□ -1.09
USP3-206ENST00000558157 PRB4P10163 310 aaPredicted RBP8.25□□□□□ -1.09
USP3-206ENST00000558157 LRRC75A-AS1Q8N1F1 130 aa8.25□□□□□ -1.09
USP3-206ENST00000558157 TEX49A0A1B0GTD5 131 aa8.25□□□□□ -1.09
USP3-206ENST00000558157 A0A1B0GX51 115 aa8.25□□□□□ -1.09
USP3-206ENST00000558157 TMEM170BQ5T4T1 132 aa8.25□□□□□ -1.09
USP3-206ENST00000558157 DYNAPQ8N1N2 210 aa8.25□□□□□ -1.09
USP3-206ENST00000558157 KLK15Q9H2R5 256 aa8.25□□□□□ -1.09
USP3-206ENST00000558157 C21orf62Q9NYP8 219 aa8.25□□□□□ -1.09
USP3-206ENST00000558157 IGLV4-69A0A075B6H9 119 aa8.24□□□□□ -1.09
USP3-206ENST00000558157 WIPF1O43516 503 aa8.24□□□□□ -1.09
USP3-206ENST00000558157 VMO1Q7Z5L0 202 aa8.24□□□□□ -1.09
USP3-206ENST00000558157 TMEM141Q96I45 108 aa8.24□□□□□ -1.09
USP3-206ENST00000558157 A4D1N5 150 aa8.24□□□□□ -1.09
USP3-206ENST00000558157 ACYP1P07311 99 aa8.24□□□□□ -1.09
USP3-206ENST00000558157 CRYGDP07320 174 aa8.24□□□□□ -1.09
USP3-206ENST00000558157 PMVKQ15126 192 aa8.24□□□□□ -1.09
USP3-206ENST00000558157 Q6ZS46 218 aa8.24□□□□□ -1.09
USP3-206ENST00000558157 MRPL53Q96EL3 112 aaKnown RBP8.24□□□□□ -1.09
USP3-206ENST00000558157 SIRPDQ9H106 197 aa8.24□□□□□ -1.09
USP3-206ENST00000558157 SMAD5-AS1Q9Y6J3 95 aa8.24□□□□□ -1.09
USP3-206ENST00000558157 NAV2Q8IVL1 2488 aa8.23□□□□□ -1.09
USP3-206ENST00000558157 IGLV1-47P01700 117 aa8.23□□□□□ -1.09
USP3-206ENST00000558157 EBI3Q14213 229 aa8.23□□□□□ -1.09
USP3-206ENST00000558157 AMELXQ99217 191 aa8.23□□□□□ -1.09
USP3-206ENST00000558157 A0A096LNT2 108 aa8.23□□□□□ -1.09
USP3-206ENST00000558157 DPH3P1Q9H4G8 78 aa8.23□□□□□ -1.09
USP3-206ENST00000558157 MED13LQ71F56 2210 aa8.23□□□□□ -1.09
USP3-206ENST00000558157 IGLV11-55A0A075B6I3 123 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 J3QQQ9 107 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 UQCRQO14949 82 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 NDUFA7O95182 113 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 LGALS3P17931 250 aaKnown RBP8.22□□□□□ -1.09
USP3-206ENST00000558157 C2orf82Q6UX34 121 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 C3orf22Q8N5N4 141 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 TIMM17AQ99595 171 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 CHCHD5Q9BSY4 110 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 C11orf21Q9P2W6 132 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 PLXNB1O43157 2135 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 A0A0J9YX75 114 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms