RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 SURF2Q15527 256 aaPredicted RBP3.45□□□□□ -1.86
RTF1-204ENST00000558117 IAH1Q2TAA2 248 aaPredicted RBP3.45□□□□□ -1.86
RTF1-204ENST00000558117 SPINK9Q5DT21 86 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 LPCAT3Q6P1A2 487 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 PRNTQ86SH4 94 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 FAM223AQ8IWN6 122 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 SLC35G3Q8N808 338 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 OR2T35Q8NGX2 323 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 OR1P1Q8NH06 330 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 COQ8AQ8NI60 647 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 RNASE11Q8TAA1 199 aaKnown RBP3.45□□□□□ -1.86
RTF1-204ENST00000558117 GPR146Q96CH1 333 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 YPEL2Q96QA6 119 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 IFI27L2Q9H2X8 130 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 JPT1Q9UK76 154 aa3.45□□□□□ -1.86
RTF1-204ENST00000558117 MRPS16Q9Y3D3 137 aaKnown RBP3.45□□□□□ -1.86
RTF1-204ENST00000558117 FXYD6-FXYD2A0A087WZ82 144 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 TRAV14DV4A0A0A6YYC5 116 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 TRAV3A0A0B4J244 114 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 ZNF705GA8MUZ8 300 aaPredicted RBP3.44□□□□□ -1.86
RTF1-204ENST00000558117 KRASP01116 189 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 IGKV1-5P01602 117 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 PRH1P02810 166 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 TRAPPC2P0DI81 140 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 TRAPPC2BP0DI82 140 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 S100GP29377 79 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 CXCL5P42830 114 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 NMUP48645 174 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 EIF4EBP1Q13541 118 aaPredicted RBP3.44□□□□□ -1.86
RTF1-204ENST00000558117 ESRGQ1W209 222 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 SPATA31B1PQ5VZV4 182 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 Q8N814 137 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 TMEM222Q9H0R3 208 aa3.44□□□□□ -1.86
RTF1-204ENST00000558117 LSM5Q9Y4Y9 91 aaKnown RBP3.44□□□□□ -1.86
RTF1-204ENST00000558117 TRAV8-3A0A0A6YYJ7 113 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 NDUFC2-KCTD14E9PQ53 114 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 G3V3Q6 166 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 CDS2O95674 445 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 CRYZL1O95825 349 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 LINC00614P0C842 121 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 IAPPP10997 89 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 CXCL2P19875 107 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 TCTE3Q8IZS6 198 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 PPP1R1CQ8WVI7 109 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 FXYD5Q96DB9 178 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 SLC35E1Q96K37 410 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 C2orf50Q96LR7 162 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 OR2A7Q96R45 310 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 ZNF331Q9NQX6 463 aaPredicted RBP3.43□□□□□ -1.86
RTF1-204ENST00000558117 OR5AC2Q9NZP5 309 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 METTL1Q9UBP6 276 aaKnown RBP3.43□□□□□ -1.86
RTF1-204ENST00000558117 TMEM56-RWDD3S4R434 201 aa3.43□□□□□ -1.86
RTF1-204ENST00000558117 TEX50A0A1B0GTY4 177 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 LOC105371267A0A1B0GV96 52 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 ARPC5O15511 151 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 SSSCA1O60232 199 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 IGKV1-16P04430 117 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 APELAP0DMC3 54 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 AKR1C2P52895 323 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 DEFB131AP59861 70 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 RAB5BP61020 215 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 DAD1P61803 113 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 CATR1Q13166 79 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 ERCC8Q13216 396 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 ACOT6Q3I5F7 207 aaPredicted RBP3.42□□□□□ -1.86
RTF1-204ENST00000558117 KRTAP20-1Q3LI63 56 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 LGALSLQ3ZCW2 172 aaPredicted RBP3.42□□□□□ -1.86
RTF1-204ENST00000558117 ZNF705AQ6ZN79 300 aaPredicted RBP3.42□□□□□ -1.86
RTF1-204ENST00000558117 ZNF833PQ6ZTB9 187 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 RBPMSQ93062 196 aaKnown RBP3.42□□□□□ -1.86
RTF1-204ENST00000558117 LINC01587Q99440 93 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 SMIM3Q9BZL3 60 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 PAIP2BQ9ULR5 123 aaKnown RBP3.42□□□□□ -1.86
RTF1-204ENST00000558117 PRELID3BQ9Y3B1 194 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 UFC1Q9Y3C8 167 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 HSPB11Q9Y547 144 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 GPR98Q8WXG9 6306 aa3.42□□□□□ -1.86
RTF1-204ENST00000558117 IGHV3-66A0A0C4DH42 116 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 FAM24AA6NFZ4 105 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 ZNF705FA8MVS1 300 aaPredicted RBP3.41□□□□□ -1.86
RTF1-204ENST00000558117 INS-IGF2F8WCM5 200 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 H0YJW9 148 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 K7EPK0 472 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 MPC2O95563 127 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 INSP01308 110 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 APOA2P02652 100 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 ATP5G1P05496 136 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 CD5P06127 495 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 ZNF705DP0CH99 300 aaPredicted RBP3.41□□□□□ -1.86
RTF1-204ENST00000558117 ZNF705BP0CI00 300 aaPredicted RBP3.41□□□□□ -1.86
RTF1-204ENST00000558117 IL15RAQ13261 267 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 SMCO1Q147U7 214 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 RTL8BQ17RB0 113 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 NMSQ5H8A3 153 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 NEGR1Q7Z3B1 354 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 C9orf62Q8N4C0 152 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 ORAOV1Q8WV07 137 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 DPH3P1Q9H4G8 78 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 KLK12Q9UKR0 248 aa3.41□□□□□ -1.86
RTF1-204ENST00000558117 YTHDF2Q9Y5A9 579 aaKnown RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms