RNA–Protein interactions for RNA: ENST00000557294.5

PRKCH-223, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-223	ENST00000557294	KIF25-AS1	Q9Y6Z4	181 aa		11.56	□□□□□ -0.56
PRKCH-223	ENST00000557294	MUC2	Q02817	5179 aa		11.56	□□□□□ -0.56
PRKCH-223	ENST00000557294	IGHV3-64	A0A075B6Q5	118 aa		11.55	□□□□□ -0.56
PRKCH-223	ENST00000557294	TRAV6	A0A075B6T7	132 aa		11.55	□□□□□ -0.56
PRKCH-223	ENST00000557294	TCRB	P04435	133 aa		11.55	□□□□□ -0.56
PRKCH-223	ENST00000557294	PRR34	Q9NV39	138 aa		11.55	□□□□□ -0.56
PRKCH-223	ENST00000557294	CHTF8	P0CG12	524 aa		11.54	□□□□□ -0.56
PRKCH-223	ENST00000557294	FLI1	Q01543	452 aa	Predicted RBP	11.54	□□□□□ -0.56
PRKCH-223	ENST00000557294	SAPCD1	Q5SSQ6	148 aa		11.54	□□□□□ -0.56
PRKCH-223	ENST00000557294	SFRP2	Q96HF1	295 aa		11.54	□□□□□ -0.56
PRKCH-223	ENST00000557294	PLA2G10	O15496	165 aa		11.53	□□□□□ -0.56
PRKCH-223	ENST00000557294	PKIA	P61925	76 aa		11.53	□□□□□ -0.56
PRKCH-223	ENST00000557294	PRNT	Q86SH4	94 aa		11.53	□□□□□ -0.56
PRKCH-223	ENST00000557294	C5orf17	Q8NAS9	161 aa		11.53	□□□□□ -0.56
PRKCH-223	ENST00000557294		A0A087WWL8	130 aa		11.52	□□□□□ -0.57
PRKCH-223	ENST00000557294	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	11.52	□□□□□ -0.57
PRKCH-223	ENST00000557294		A0A1W2PPV4	95 aa		11.52	□□□□□ -0.57
PRKCH-223	ENST00000557294	FABP5P3	A8MUU1	101 aa		11.52	□□□□□ -0.57
PRKCH-223	ENST00000557294	IL7	P13232	177 aa		11.52	□□□□□ -0.57
PRKCH-223	ENST00000557294	DNLZ	Q5SXM8	178 aa		11.52	□□□□□ -0.57
PRKCH-223	ENST00000557294	REG3G	Q6UW15	175 aa		11.52	□□□□□ -0.57
PRKCH-223	ENST00000557294	OR10G8	Q8NGN5	311 aa		11.52	□□□□□ -0.57
PRKCH-223	ENST00000557294	hDV102S1	A0JD36	115 aa		11.51	□□□□□ -0.57
PRKCH-223	ENST00000557294	SLPI	P03973	132 aa		11.51	□□□□□ -0.57
PRKCH-223	ENST00000557294	ARMS2	P0C7Q2	107 aa		11.51	□□□□□ -0.57
PRKCH-223	ENST00000557294	PRR3	P79522	188 aa	Known RBP	11.51	□□□□□ -0.57
PRKCH-223	ENST00000557294	SPINK6	Q6UWN8	80 aa		11.51	□□□□□ -0.57
PRKCH-223	ENST00000557294	OR11H4	Q8NGC9	324 aa		11.51	□□□□□ -0.57
PRKCH-223	ENST00000557294	SCGB1C1	Q8TD33	95 aa		11.51	□□□□□ -0.57
PRKCH-223	ENST00000557294	GTSF1	Q8WW33	167 aa		11.51	□□□□□ -0.57
PRKCH-223	ENST00000557294	CHCHD5	Q9BSY4	110 aa		11.51	□□□□□ -0.57
PRKCH-223	ENST00000557294	NUDT15	Q9NV35	164 aa		11.51	□□□□□ -0.57
PRKCH-223	ENST00000557294		H0YIZ8	118 aa		11.5	□□□□□ -0.57
PRKCH-223	ENST00000557294		H3BVH4	76 aa		11.5	□□□□□ -0.57
PRKCH-223	ENST00000557294	LYRM1	O43325	122 aa		11.5	□□□□□ -0.57
PRKCH-223	ENST00000557294	LINC00269	Q8N2A0	174 aa		11.5	□□□□□ -0.57
PRKCH-223	ENST00000557294	PTTG1	O95997	202 aa		11.49	□□□□□ -0.57
PRKCH-223	ENST00000557294	AP5S1	Q9NUS5	200 aa		11.49	□□□□□ -0.57
PRKCH-223	ENST00000557294	EPDR1	Q9UM22	224 aa		11.49	□□□□□ -0.57
PRKCH-223	ENST00000557294		B4DEV8	164 aa		11.48	□□□□□ -0.57
PRKCH-223	ENST00000557294	HMGB3	O15347	200 aa	Known RBP	11.48	□□□□□ -0.57
PRKCH-223	ENST00000557294	RBX1	P62877	108 aa		11.48	□□□□□ -0.57
PRKCH-223	ENST00000557294	H2AFB2	P0C5Z0	115 aa		11.47	□□□□□ -0.57
PRKCH-223	ENST00000557294	SUMO1	P63165	101 aa	Known RBP	11.47	□□□□□ -0.57
PRKCH-223	ENST00000557294	LRRC37A5P	Q49AS3	106 aa		11.47	□□□□□ -0.57
PRKCH-223	ENST00000557294	CLPSL2	Q6UWE3	100 aa		11.47	□□□□□ -0.57
PRKCH-223	ENST00000557294	SUN5	Q8TC36	379 aa		11.47	□□□□□ -0.57
PRKCH-223	ENST00000557294	NDUFA13	Q9P0J0	144 aa		11.47	□□□□□ -0.57
PRKCH-223	ENST00000557294	PHLDA3	Q9Y5J5	127 aa		11.47	□□□□□ -0.57
PRKCH-223	ENST00000557294	KRBOX1	C9JBD0	128 aa		11.46	□□□□□ -0.57
PRKCH-223	ENST00000557294	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	11.46	□□□□□ -0.57
PRKCH-223	ENST00000557294	KRTAP9-6	A0A140TA67	174 aa		11.45	□□□□□ -0.58
PRKCH-223	ENST00000557294		M0R381	172 aa		11.45	□□□□□ -0.58
PRKCH-223	ENST00000557294	SIX6	O95475	246 aa		11.45	□□□□□ -0.58
PRKCH-223	ENST00000557294	ARL14EPL	P0DKL9	152 aa		11.45	□□□□□ -0.58
PRKCH-223	ENST00000557294	RAB2A	P61019	212 aa		11.45	□□□□□ -0.58
PRKCH-223	ENST00000557294	SRSF9	Q13242	221 aa	Known RBP eCLIP	11.45	□□□□□ -0.58
PRKCH-223	ENST00000557294	NTM-AS1	Q6ZSK4	140 aa		11.45	□□□□□ -0.58
PRKCH-223	ENST00000557294	NEXN-AS1	Q8NBZ9	246 aa		11.45	□□□□□ -0.58
PRKCH-223	ENST00000557294	HSPB11	Q9Y547	144 aa		11.45	□□□□□ -0.58
PRKCH-223	ENST00000557294	IGLV10-54	A0A075B6I4	117 aa		11.44	□□□□□ -0.58
PRKCH-223	ENST00000557294	GRIFIN	A4D1Z8	144 aa		11.44	□□□□□ -0.58
PRKCH-223	ENST00000557294	STAG3L2	P0CL84	134 aa		11.44	□□□□□ -0.58
PRKCH-223	ENST00000557294	STAG3L3	P0CL85	134 aa		11.44	□□□□□ -0.58
PRKCH-223	ENST00000557294	RAB4B	P61018	213 aa		11.44	□□□□□ -0.58
PRKCH-223	ENST00000557294	TMEM97	Q5BJF2	176 aa		11.44	□□□□□ -0.58
PRKCH-223	ENST00000557294	ARL2-SNX15	V9GYD0	113 aa		11.44	□□□□□ -0.58
PRKCH-223	ENST00000557294	TRAV8-4	A0A0B4J246	113 aa		11.43	□□□□□ -0.58
PRKCH-223	ENST00000557294		P01737	135 aa		11.43	□□□□□ -0.58
PRKCH-223	ENST00000557294	TPT1	P13693	172 aa	Known RBP	11.43	□□□□□ -0.58
PRKCH-223	ENST00000557294	CRIP1	P50238	77 aa		11.43	□□□□□ -0.58
PRKCH-223	ENST00000557294	COX6A2	Q02221	97 aa		11.43	□□□□□ -0.58
PRKCH-223	ENST00000557294	REG3A	Q06141	175 aa		11.43	□□□□□ -0.58
PRKCH-223	ENST00000557294	MAJIN	Q3KP22	176 aa		11.43	□□□□□ -0.58
PRKCH-223	ENST00000557294	PRR27	Q6MZM9	219 aa		11.43	□□□□□ -0.58
PRKCH-223	ENST00000557294	SMIM3	Q9BZL3	60 aa		11.43	□□□□□ -0.58
PRKCH-223	ENST00000557294		M0R036	132 aa		11.42	□□□□□ -0.58
PRKCH-223	ENST00000557294	GZMB	P10144	247 aa		11.42	□□□□□ -0.58
PRKCH-223	ENST00000557294	GCHFR	P30047	84 aa		11.42	□□□□□ -0.58
PRKCH-223	ENST00000557294	CYCS	P99999	105 aa	Known RBP	11.42	□□□□□ -0.58
PRKCH-223	ENST00000557294	GAGE6	Q13070	117 aa		11.42	□□□□□ -0.58
PRKCH-223	ENST00000557294	ZFP82	Q8N141	532 aa		11.42	□□□□□ -0.58
PRKCH-223	ENST00000557294	LYPD6B	Q8NI32	183 aa		11.42	□□□□□ -0.58
PRKCH-223	ENST00000557294	FAT4	Q6V0I7	4981 aa		11.41	□□□□□ -0.58
PRKCH-223	ENST00000557294	TRAV34	A0A0B4J273	112 aa		11.41	□□□□□ -0.58
PRKCH-223	ENST00000557294	NDUFS6	O75380	124 aa	Known RBP	11.41	□□□□□ -0.58
PRKCH-223	ENST00000557294	VAX2	Q9UIW0	290 aa		11.41	□□□□□ -0.58
PRKCH-223	ENST00000557294	MUC21	A0A0G2JKD1	596 aa		11.4	□□□□□ -0.58
PRKCH-223	ENST00000557294	CDC34	P49427	236 aa	Predicted RBP	11.4	□□□□□ -0.58
PRKCH-223	ENST00000557294	STPG4	Q8N801	248 aa		11.4	□□□□□ -0.58
PRKCH-223	ENST00000557294	PRSS3P2	Q8NHM4	247 aa		11.4	□□□□□ -0.58
PRKCH-223	ENST00000557294	TRBV6-1	A0A0K0K1D8	114 aa		11.39	□□□□□ -0.59
PRKCH-223	ENST00000557294	RAB24	Q969Q5	203 aa		11.39	□□□□□ -0.59
PRKCH-223	ENST00000557294	DERL1	Q9BUN8	251 aa		11.39	□□□□□ -0.59
PRKCH-223	ENST00000557294	WFDC1	Q9HC57	220 aa		11.39	□□□□□ -0.59
PRKCH-223	ENST00000557294	TRBV25-1	A0A075B6N4	114 aa		11.38	□□□□□ -0.59
PRKCH-223	ENST00000557294	IGKV2-24	A0A0C4DH68	120 aa		11.38	□□□□□ -0.59
PRKCH-223	ENST00000557294	RPL12	P30050	165 aa	Known RBP	11.38	□□□□□ -0.59
PRKCH-223	ENST00000557294	RPS10	P46783	165 aa	Known RBP	11.38	□□□□□ -0.59
PRKCH-223	ENST00000557294	COX8C	Q7Z4L0	72 aa		11.38	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms