RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	DGAT2L7P	Q6IED9	249 aa		5.48	□□□□□ -1.53
SYNE2-222	ENST00000556725	ZC2HC1A	Q96GY0	325 aa		5.48	□□□□□ -1.53
SYNE2-222	ENST00000556725	LINC01600	Q96MT4	127 aa		5.48	□□□□□ -1.53
SYNE2-222	ENST00000556725	IGKV3D-20	A0A0C4DH25	116 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	CENPX	A8MT69	81 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	TMEM262	E9PQX1	116 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	PLA2G10	O15496	165 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	NOL3	O60936	208 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	CHTF8	P0CG12	524 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	KHDC3L	Q587J8	217 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	ARL6IP6	Q8N6S5	226 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	C15orf54	Q8N8G6	183 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	OR10G9	Q8NGN4	311 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	OR2G3	Q8NGZ4	309 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	DPH3P1	Q9H4G8	78 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725	OR5AC2	Q9NZP5	309 aa		5.47	□□□□□ -1.53
SYNE2-222	ENST00000556725		A0A087WYN8	130 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725		H0YIZ8	118 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	PHOX2A	O14813	284 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	HMGB3	O15347	200 aa	Known RBP	5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	TCRB	P04435	133 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	KRTAP10-8	P60410	259 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	CIRBP	Q14011	172 aa	Known RBP	5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	MPV17L2	Q567V2	206 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	FAM74A1	Q5RGS3	127 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	KRTAP26-1	Q6PEX3	210 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	OR10G7	Q8NGN6	311 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	DPH3	Q96FX2	82 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	CHCHD7	Q9BUK0	85 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725	PSG8	Q9UQ74	426 aa		5.46	□□□□□ -1.54
SYNE2-222	ENST00000556725		A0A087WWL8	130 aa		5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	C17orf112	F2Z3M2	114 aa		5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	SIX6	O95475	246 aa		5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	ANG	P03950	147 aa	Known RBP	5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	IL7	P13232	177 aa		5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	S100A4	P26447	101 aa	Known RBP	5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	TAS2R45	P59539	299 aa		5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	RPL19	P84098	196 aa	Known RBP	5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	CNPY1	Q3B7I2	92 aa		5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	PIK3CD-AS1	Q5SR53	167 aa		5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	FAM74A4	Q5TZK3	123 aa		5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	KCNIP4	Q6PIL6	250 aa		5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	NDFIP1	Q9BT67	221 aa		5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	KCNIP2	Q9NS61	270 aa		5.45	□□□□□ -1.54
SYNE2-222	ENST00000556725	CRP	P02741	224 aa		5.44	□□□□□ -1.54
SYNE2-222	ENST00000556725	SLPI	P03973	132 aa		5.44	□□□□□ -1.54
SYNE2-222	ENST00000556725	UBE2D3	P61077	147 aa		5.44	□□□□□ -1.54
SYNE2-222	ENST00000556725	UBE2D2	P62837	147 aa		5.44	□□□□□ -1.54
SYNE2-222	ENST00000556725	LRRC37A5P	Q49AS3	106 aa		5.44	□□□□□ -1.54
SYNE2-222	ENST00000556725	SMUG1	Q53HV7	270 aa		5.44	□□□□□ -1.54
SYNE2-222	ENST00000556725	CLPSL2	Q6UWE3	100 aa		5.44	□□□□□ -1.54
SYNE2-222	ENST00000556725	PRNT	Q86SH4	94 aa		5.44	□□□□□ -1.54
SYNE2-222	ENST00000556725	HSD17B11	Q8NBQ5	300 aa		5.44	□□□□□ -1.54
SYNE2-222	ENST00000556725	NUDT15	Q9NV35	164 aa		5.44	□□□□□ -1.54
SYNE2-222	ENST00000556725	TRBV6-8	A0A0A6YYG3	113 aa		5.43	□□□□□ -1.54
SYNE2-222	ENST00000556725		A0A0J9YXV3	536 aa		5.43	□□□□□ -1.54
SYNE2-222	ENST00000556725		H3BVH4	76 aa		5.43	□□□□□ -1.54
SYNE2-222	ENST00000556725	LYRM1	O43325	122 aa		5.43	□□□□□ -1.54
SYNE2-222	ENST00000556725	TCRA	P04437	139 aa		5.43	□□□□□ -1.54
SYNE2-222	ENST00000556725	FLI1	Q01543	452 aa	Predicted RBP	5.43	□□□□□ -1.54
SYNE2-222	ENST00000556725	RNF151	Q2KHN1	245 aa		5.43	□□□□□ -1.54
SYNE2-222	ENST00000556725	KIF25-AS1	Q9Y6Z4	181 aa		5.43	□□□□□ -1.54
SYNE2-222	ENST00000556725	TRBV7-3	A0A075B6L6	115 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	GRIFIN	A4D1Z8	144 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	CCDC160	A6NGH7	325 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	RHOD	O00212	210 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	ARMS2	P0C7Q2	107 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	RAB2A	P61019	212 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	RPL36A	P83881	106 aa	Known RBP	5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	MIA	Q16674	131 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	PQLC2	Q6ZP29	291 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	C5orf17	Q8NAS9	161 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	SPACA4	Q8TDM5	124 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	RPL36AL	Q969Q0	106 aa	Known RBP	5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	SFRP2	Q96HF1	295 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	SMIM3	Q9BZL3	60 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	IL36B	Q9NZH7	164 aa		5.42	□□□□□ -1.54
SYNE2-222	ENST00000556725	IGLV10-54	A0A075B6I4	117 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	IGHV3-64	A0A075B6Q5	118 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	TRAV34	A0A0B4J273	112 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	SERTM2	A0A1B0GWG4	89 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725		A0A1W2PPV4	95 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	hDV102S1	A0JD36	115 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	FABP5P3	A8MUU1	101 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725		B4DEV8	164 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	ARL14EPL	P0DKL9	152 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	CRIP1	P50238	77 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	CNBP	P62633	177 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	ZFP69	Q49AA0	526 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	WDR73	Q6P4I2	378 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	NTM-AS1	Q6ZSK4	140 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	LINC00269	Q8N2A0	174 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	SCGB1C1	Q8TD33	95 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	RNF185	Q96GF1	192 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	CHCHD5	Q9BSY4	110 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	WFDC1	Q9HC57	220 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	PRR34	Q9NV39	138 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	PLAC8	Q9NZF1	115 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	EPDR1	Q9UM22	224 aa		5.41	□□□□□ -1.54
SYNE2-222	ENST00000556725	MUC21	A0A0G2JKD1	596 aa		5.4	□□□□□ -1.54

Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms