RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 GSKIPQ9P0R6 139 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 ABCA1O95477 2261 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 TGP01266 2768 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 BDP1A6H8Y1 2624 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 CELSR3Q9NYQ7 3312 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 SYNE1Q8NF91 8797 aaKnown RBP0.08□□□□□ -2.4
SCFD1-216ENST00000555550 KCPQ6ZWJ8 1503 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 PHLPP1O60346 1717 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 LAMA3Q16787 3333 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 FAT3Q8TDW7 4589 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 MXRA5Q9NR99 2828 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 ITPR3Q14573 2671 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 CHD6Q8TD26 2715 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 TRBV10-1A0A0K0K1A3 114 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 HIGD1CA8MV81 97 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 C5orf58C9J3I9 102 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 TPST1O60507 370 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 NCR2O95944 276 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 TFF1P04155 84 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 DBIP07108 87 aaKnown RBP0.07□□□□□ -2.4
SCFD1-216ENST00000555550 CKS2P33552 79 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 ELOF1P60002 83 aaKnown RBP0.07□□□□□ -2.4
SCFD1-216ENST00000555550 PCBD1P61457 104 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 ZNF56Q15929 161 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 SMIM21Q3B7S5 101 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 FOCADQ5VW36 1801 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 NAV3Q8IVL0 2385 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 CCDC171Q6TFL3 1326 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 GCN1Q92616 2671 aaKnown RBP0.07□□□□□ -2.4
SCFD1-216ENST00000555550 MYH13Q9UKX3 1938 aa0.07□□□□□ -2.4
SCFD1-216ENST00000555550 LOC285556D6RIA3 1793 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 DISP2A7MBM2 1401 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 MYOM3Q5VTT5 1437 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 MGAM2Q2M2H8 2515 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 PNMA8CA0A1B0GUJ8 204 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 SULT1C4O75897 302 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 PYYP10082 97 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 IL7P13232 177 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 HIST1H1BP16401 226 aaKnown RBP0.06□□□□□ -2.4
SCFD1-216ENST00000555550 KLKP1Q107X0 134 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 LINC01545Q5VT33 79 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 IDO2Q6ZQW0 420 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 Q6ZS92 163 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 CROCCP2Q86T23 111 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 PPDPFLQ8WWR9 84 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 ANP32BQ92688 251 aaKnown RBP0.06□□□□□ -2.4
SCFD1-216ENST00000555550 Q96NJ1 140 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 AP1S3Q96PC3 154 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 SMIM7Q9BQ49 75 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 SPANXCQ9NY87 97 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 PLAC8Q9NZF1 115 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 BOKQ9UMX3 212 aaPredicted RBP0.06□□□□□ -2.4
SCFD1-216ENST00000555550 MYH6P13533 1939 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 BCORL1Q5H9F3 1711 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 DSPP15924 2871 aaKnown RBP0.06□□□□□ -2.4
SCFD1-216ENST00000555550 TNCP24821 2201 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 PHIPQ8WWQ0 1821 aa0.06□□□□□ -2.4
SCFD1-216ENST00000555550 KIAA0100Q14667 2235 aaKnown RBP0.05□□□□□ -2.4
SCFD1-216ENST00000555550 SPAG17Q6Q759 2223 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 NPFFO15130 113 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 CCKP06307 115 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 CMPK1P30085 196 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 SPINT3P49223 89 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 ZNF137PP52743 207 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 CLLU1Q5K131 121 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 MIC13Q5XKP0 118 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 Q86TA4 180 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 NDUFA11Q86Y39 141 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 DYNLRB2Q8TF09 96 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 IFI27L1Q96BM0 104 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 ATG5Q9H1Y0 275 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 TAS2R8Q9NYW2 309 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 KDM6BO15054 1643 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 TMEM2Q9UHN6 1383 aa0.05□□□□□ -2.4
SCFD1-216ENST00000555550 ATRQ13535 2644 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 MBD5Q9P267 1494 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 SIPA1L3O60292 1781 aaPredicted RBP0.04□□□□□ -2.4
SCFD1-216ENST00000555550 CACNA1HO95180 2353 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 TEX49A0A1B0GTD5 131 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 BBIP1A8MTZ0 92 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 ZNF670-ZNF695F2Z2N8 137 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 M0R129 80 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 CCL3L1P16619 93 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 SNX29P2Q8IUI4 249 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 TPT1P8Q9HAU6 139 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 BATF3Q9NR55 127 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 NDUFA12Q9UI09 145 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 ERG28Q9UKR5 140 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 EPG5Q9HCE0 2579 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 QRICH2Q9H0J4 1663 aa0.04□□□□□ -2.4
SCFD1-216ENST00000555550 TNS1Q9HBL0 1735 aaKnown RBP0.04□□□□□ -2.4
SCFD1-216ENST00000555550 GRIN2AQ12879 1464 aa0.03□□□□□ -2.4
SCFD1-216ENST00000555550 DMBT1Q9UGM3 2413 aaPredicted RBP0.03□□□□□ -2.4
SCFD1-216ENST00000555550 GVQW2A0A096LPI5 108 aaPredicted RBP0.03□□□□□ -2.4
SCFD1-216ENST00000555550 RPS25P62851 125 aaKnown RBP0.03□□□□□ -2.4
SCFD1-216ENST00000555550 C6orf52Q5T4I8 152 aa0.03□□□□□ -2.4
SCFD1-216ENST00000555550 Q6ZUT4 128 aa0.03□□□□□ -2.4
SCFD1-216ENST00000555550 TSKUQ8WUA8 353 aa0.03□□□□□ -2.4
SCFD1-216ENST00000555550 MAFIPQ8WZ33 124 aa0.03□□□□□ -2.4
SCFD1-216ENST00000555550 DPH3Q96FX2 82 aa0.03□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms