RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 DNAH1Q9P2D7 4330 aa10.04□□□□□ -0.8
SHMT2-217ENST00000555116 HIGD1CA8MV81 97 aa10.04□□□□□ -0.8
SHMT2-217ENST00000555116 A8MWL6 223 aa10.04□□□□□ -0.8
SHMT2-217ENST00000555116 HTN3P15516 51 aa10.04□□□□□ -0.8
SHMT2-217ENST00000555116 TDRG1Q3Y452 100 aa10.04□□□□□ -0.8
SHMT2-217ENST00000555116 SAPCD1Q5SSQ6 148 aa10.04□□□□□ -0.8
SHMT2-217ENST00000555116 LINC00476Q8WZB0 136 aa10.04□□□□□ -0.8
SHMT2-217ENST00000555116 RAB4BP61018 213 aa10.03□□□□□ -0.8
SHMT2-217ENST00000555116 RASL11AQ6T310 242 aa10.03□□□□□ -0.8
SHMT2-217ENST00000555116 FAM159AQ6UWV7 190 aa10.03□□□□□ -0.8
SHMT2-217ENST00000555116 Q6ZTI0 123 aa10.03□□□□□ -0.8
SHMT2-217ENST00000555116 ZC2HC1AQ96GY0 325 aa10.03□□□□□ -0.8
SHMT2-217ENST00000555116 PRO1933Q9H354 126 aa10.03□□□□□ -0.8
SHMT2-217ENST00000555116 GAGE12BA1L429 117 aa10.02□□□□□ -0.8
SHMT2-217ENST00000555116 GRIFINA4D1Z8 144 aa10.02□□□□□ -0.8
SHMT2-217ENST00000555116 GAGE7O76087 117 aa10.02□□□□□ -0.8
SHMT2-217ENST00000555116 HLA-DQA1P01909 254 aa10.02□□□□□ -0.8
SHMT2-217ENST00000555116 GAGE12FP0CL80 117 aa10.02□□□□□ -0.8
SHMT2-217ENST00000555116 GAGE12GP0CL81 117 aa10.02□□□□□ -0.8
SHMT2-217ENST00000555116 GAGE12IP0CL82 117 aa10.02□□□□□ -0.8
SHMT2-217ENST00000555116 C2orf88Q9BSF0 95 aa10.02□□□□□ -0.8
SHMT2-217ENST00000555116 MDFICQ9P1T7 246 aa10.02□□□□□ -0.8
SHMT2-217ENST00000555116 C11orf21Q9P2W6 132 aa10.02□□□□□ -0.8
SHMT2-217ENST00000555116 NAGKQ9UJ70 344 aa10.02□□□□□ -0.8
SHMT2-217ENST00000555116 ATP5G1P05496 136 aa10.02□□□□□ -0.81
SHMT2-217ENST00000555116 GZMBP10144 247 aa10.02□□□□□ -0.81
SHMT2-217ENST00000555116 ZNF415Q09FC8 603 aa10.02□□□□□ -0.81
SHMT2-217ENST00000555116 GTSF1Q8WW33 167 aa10.02□□□□□ -0.81
SHMT2-217ENST00000555116 TRGV11A0A075B6L2 103 aa10.01□□□□□ -0.81
SHMT2-217ENST00000555116 GNRH2O43555 120 aa10.01□□□□□ -0.81
SHMT2-217ENST00000555116 IQCJQ1A5X6 159 aa10.01□□□□□ -0.81
SHMT2-217ENST00000555116 ATP5L2Q7Z4Y8 100 aa10.01□□□□□ -0.81
SHMT2-217ENST00000555116 GFRA4Q9GZZ7 299 aa10.01□□□□□ -0.81
SHMT2-217ENST00000555116 FAM231BA6NCW3 169 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 NUPR1O60356 82 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 CRIP1P50238 77 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 COX8CQ7Z4L0 72 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 NDUFAF3Q9BU61 184 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 TRGV1A0A0A0MS02 117 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 IGHV3-16A0A0C4DH30 117 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 A0A1B0GV90 55 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 A0A1B0GXF2 115 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 LY6G6CO95867 125 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 APCSP02743 223 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 Q0VG73 95 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 KIAA1644Q3SXP7 199 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 LGALS9CQ6DKI2 356 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 OR2D3Q8NGH3 330 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 KCNS1Q96KK3 526 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 C18orf15Q96N68 181 aa10□□□□□ -0.81
SHMT2-217ENST00000555116 F5H768 121 aa9.99□□□□□ -0.81
SHMT2-217ENST00000555116 SLAQ13239 276 aa9.99□□□□□ -0.81
SHMT2-217ENST00000555116 LGALS9BQ3B8N2 356 aa9.99□□□□□ -0.81
SHMT2-217ENST00000555116 MRPL16Q9NX20 251 aaKnown RBP9.99□□□□□ -0.81
SHMT2-217ENST00000555116 RYR2Q92736 4967 aa9.99□□□□□ -0.81
SHMT2-217ENST00000555116 NACAE9PAV3 2078 aa9.99□□□□□ -0.81
SHMT2-217ENST00000555116 RYR3Q15413 4870 aa9.98□□□□□ -0.81
SHMT2-217ENST00000555116 LINC00310P59036 64 aa9.98□□□□□ -0.81
SHMT2-217ENST00000555116 ZNF664Q8N3J9 261 aa9.98□□□□□ -0.81
SHMT2-217ENST00000555116 PGLYRP4Q96LB8 373 aa9.98□□□□□ -0.81
SHMT2-217ENST00000555116 SPXQ9BT56 116 aa9.98□□□□□ -0.81
SHMT2-217ENST00000555116 FABP5P3A8MUU1 101 aa9.98□□□□□ -0.81
SHMT2-217ENST00000555116 ESDP10768 282 aa9.98□□□□□ -0.81
SHMT2-217ENST00000555116 CAMPP49913 170 aa9.98□□□□□ -0.81
SHMT2-217ENST00000555116 FOXA3P55318 350 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-217ENST00000555116 BAGE3Q86Y29 109 aa9.98□□□□□ -0.81
SHMT2-217ENST00000555116 F2Z2F3 143 aa9.97□□□□□ -0.81
SHMT2-217ENST00000555116 SERF1AO75920 110 aa9.97□□□□□ -0.81
SHMT2-217ENST00000555116 HBBP68871 147 aa9.97□□□□□ -0.81
SHMT2-217ENST00000555116 OR10J3Q5JRS4 329 aa9.97□□□□□ -0.81
SHMT2-217ENST00000555116 TRGV2A0A075B6R0 118 aa9.96□□□□□ -0.81
SHMT2-217ENST00000555116 IGKV3D-20A0A0C4DH25 116 aa9.96□□□□□ -0.81
SHMT2-217ENST00000555116 SRIP30626 198 aa9.96□□□□□ -0.81
SHMT2-217ENST00000555116 SH2D1AO60880 128 aa9.96□□□□□ -0.82
SHMT2-217ENST00000555116 RASL10AQ92737 203 aa9.96□□□□□ -0.82
SHMT2-217ENST00000555116 SSBP4Q9BWG4 385 aaPredicted RBP9.96□□□□□ -0.82
SHMT2-217ENST00000555116 VPS13DQ5THJ4 4388 aa9.95□□□□□ -0.82
SHMT2-217ENST00000555116 M0R2P5 195 aa9.95□□□□□ -0.82
SHMT2-217ENST00000555116 FAM162BQ5T6X4 162 aa9.95□□□□□ -0.82
SHMT2-217ENST00000555116 C15orf53Q8NAA6 179 aa9.95□□□□□ -0.82
SHMT2-217ENST00000555116 C9orf85Q96MD7 179 aa9.95□□□□□ -0.82
SHMT2-217ENST00000555116 SCGB1D1O95968 90 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 RNASE3P12724 160 aaKnown RBP9.93□□□□□ -0.82
SHMT2-217ENST00000555116 TRAV26-1A0A087WT03 109 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 A0A1B0GUT8 65 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 IGHV3-53P01767 116 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 ORM1P02763 201 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 P0DMU3 169 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 FAM231AP0DMU4 169 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 FAM231CP0DMU5 169 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 MRPL52Q86TS9 123 aaKnown RBP9.93□□□□□ -0.82
SHMT2-217ENST00000555116 ZNF575Q86XF7 245 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 POM121L12Q8N7R1 296 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 C18orf32Q8TCD1 76 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 ALKBH7Q9BT30 221 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-217ENST00000555116 HYDINQ4G0P3 5121 aa9.93□□□□□ -0.82
SHMT2-217ENST00000555116 M0R143 59 aa9.92□□□□□ -0.82
SHMT2-217ENST00000555116 TCAPO15273 167 aa9.91□□□□□ -0.82
SHMT2-217ENST00000555116 ARMS2P0C7Q2 107 aa9.91□□□□□ -0.82
SHMT2-217ENST00000555116 FHL2Q14192 279 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms