RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 C19orf54Q5BKX5 351 aa9.3□□□□□ -0.92
SHMT2-207ENST00000553837 SCGB1D4Q6XE38 83 aa9.3□□□□□ -0.92
SHMT2-207ENST00000553837 SMIM9A6NGZ8 99 aa9.3□□□□□ -0.92
SHMT2-207ENST00000553837 ZNF815PA8K554 130 aa9.3□□□□□ -0.92
SHMT2-207ENST00000553837 SCGB3A1Q96QR1 104 aa9.3□□□□□ -0.92
SHMT2-207ENST00000553837 SPANXCQ9NY87 97 aa9.3□□□□□ -0.92
SHMT2-207ENST00000553837 IGSF10Q6WRI0 2623 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 TRAV8-2A0A0B4J237 113 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 IGHV1-69DA0A0B4J2H0 117 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 IGHV1-69P01742 117 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 IGHV4-38-2P0DP08 117 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 ANXA2RQ3ZCQ2 193 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 ORMDL2Q53FV1 153 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 SFTA2Q6UW10 78 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 KIR2DL4Q99706 377 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 PRADC1Q9BSG0 188 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 A4D1N5 150 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 NEXN-AS1Q8NBZ9 246 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 EEF1AKMT3Q96AZ1 226 aa9.29□□□□□ -0.92
SHMT2-207ENST00000553837 CRYBG3Q68DQ2 2970 aa9.28□□□□□ -0.92
SHMT2-207ENST00000553837 CSMD2Q7Z408 3487 aa9.28□□□□□ -0.92
SHMT2-207ENST00000553837 H3BVH4 76 aa9.28□□□□□ -0.92
SHMT2-207ENST00000553837 TCL1BO95988 128 aa9.28□□□□□ -0.92
SHMT2-207ENST00000553837 TRGV3P03979 118 aa9.28□□□□□ -0.92
SHMT2-207ENST00000553837 CD7P09564 240 aa9.28□□□□□ -0.92
SHMT2-207ENST00000553837 SLC25A16P16260 332 aa9.28□□□□□ -0.92
SHMT2-207ENST00000553837 NDUFA11Q86Y39 141 aa9.28□□□□□ -0.92
SHMT2-207ENST00000553837 C10orf105Q8TEF2 133 aa9.28□□□□□ -0.92
SHMT2-207ENST00000553837 RASL10AQ92737 203 aa9.28□□□□□ -0.92
SHMT2-207ENST00000553837 TOMM6Q96B49 74 aa9.28□□□□□ -0.92
SHMT2-207ENST00000553837 TRAV26-2A0A0B4J265 109 aa9.27□□□□□ -0.92
SHMT2-207ENST00000553837 TRAV41A0A0B4J266 112 aa9.27□□□□□ -0.92
SHMT2-207ENST00000553837 TRBV12-3P01733 135 aa9.27□□□□□ -0.92
SHMT2-207ENST00000553837 MOB4Q9Y3A3 225 aa9.27□□□□□ -0.92
SHMT2-207ENST00000553837 SPG11Q96JI7 2443 aa9.27□□□□□ -0.93
SHMT2-207ENST00000553837 USP9XQ93008 2570 aaPredicted RBP9.27□□□□□ -0.93
SHMT2-207ENST00000553837 IGHV4-30-2A0A087WSY4 118 aa9.27□□□□□ -0.93
SHMT2-207ENST00000553837 TRBV7-1A0A0A6YYK4 115 aa9.27□□□□□ -0.93
SHMT2-207ENST00000553837 Q6ZQT7 251 aa9.27□□□□□ -0.93
SHMT2-207ENST00000553837 LRRC75A-AS1Q8N1F1 130 aa9.27□□□□□ -0.93
SHMT2-207ENST00000553837 ANKRD29Q8N6D5 301 aa9.27□□□□□ -0.93
SHMT2-207ENST00000553837 CCL19Q99731 98 aa9.27□□□□□ -0.93
SHMT2-207ENST00000553837 SMIM2Q9BVW6 85 aa9.27□□□□□ -0.93
SHMT2-207ENST00000553837 U3KQE9 123 aa9.27□□□□□ -0.93
SHMT2-207ENST00000553837 TRAV4A0A0B4J268 109 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 IGKV3D-20A0A0C4DH25 116 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 RBAKDNA6NC62 111 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 SCGB1C2P0DMR2 95 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 MRPL23Q16540 153 aaKnown RBP9.26□□□□□ -0.93
SHMT2-207ENST00000553837 LY6EQ16553 131 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 PIMREGQ9BSJ6 248 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 AGPAT4-IT1Q9H0P7 198 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 C11orf21Q9P2W6 132 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 IGHV4-4A0A075B6R2 117 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 Q6ZS46 218 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 PLEKHB2Q96CS7 222 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 SPANXDQ9BXN6 97 aa9.26□□□□□ -0.93
SHMT2-207ENST00000553837 COX6B1P14854 86 aa9.25□□□□□ -0.93
SHMT2-207ENST00000553837 SPANXN1Q5VSR9 72 aa9.25□□□□□ -0.93
SHMT2-207ENST00000553837 UNQ9165/PRO28630Q6UXU0 137 aa9.25□□□□□ -0.93
SHMT2-207ENST00000553837 SLC50A1Q9BRV3 221 aa9.25□□□□□ -0.93
SHMT2-207ENST00000553837 CRIP2P52943 208 aaPredicted RBP9.24□□□□□ -0.93
SHMT2-207ENST00000553837 METTL26Q96S19 204 aa9.24□□□□□ -0.93
SHMT2-207ENST00000553837 KLK15Q9H2R5 256 aa9.24□□□□□ -0.93
SHMT2-207ENST00000553837 A0A1B0GX51 115 aa9.24□□□□□ -0.93
SHMT2-207ENST00000553837 AVPP01185 164 aa9.24□□□□□ -0.93
SHMT2-207ENST00000553837 C10orf126Q8N4M7 172 aa9.24□□□□□ -0.93
SHMT2-207ENST00000553837 BAALCQ8WXS3 180 aa9.24□□□□□ -0.93
SHMT2-207ENST00000553837 C20orf173Q96LM9 149 aa9.24□□□□□ -0.93
SHMT2-207ENST00000553837 DOPEY1Q5JWR5 2465 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 IGHV7-4-1A0A0J9YVY3 117 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 J3KT08 172 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 BLCAPP62952 87 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 LINC01587Q99440 93 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 H3BUX3 64 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 SLC25A20O43772 301 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 CFC1BP0CG36 223 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 CFC1P0CG37 223 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 HERVK_113P61574 105 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 GPHB5Q86YW7 130 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 PRO1854Q9UHT4 67 aa9.23□□□□□ -0.93
SHMT2-207ENST00000553837 A0A0J9YY99 117 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 A6NDX4 124 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 FAM223BA6NKX1 122 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 SUMO2P61956 95 aaKnown RBP9.22□□□□□ -0.93
SHMT2-207ENST00000553837 PAPPA-AS1Q5QFB9 102 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 FAM223AQ8IWN6 122 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 KLHL30-AS1Q8NEE0 82 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 OR13C6PQ8NH95 151 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 IGHV3-11P01762 117 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 IGF1P05019 195 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 DEFB1P60022 68 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 PRR9Q5T870 116 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 C2orf66Q6UXQ4 117 aa9.22□□□□□ -0.93
SHMT2-207ENST00000553837 CRLF1O75462 422 aa9.2□□□□□ -0.94
SHMT2-207ENST00000553837 IGHV3-30P01768 117 aa9.2□□□□□ -0.94
SHMT2-207ENST00000553837 IGHG2P01859 326 aa9.2□□□□□ -0.94
SHMT2-207ENST00000553837 IGHV3-30-5P0DP03 117 aa9.2□□□□□ -0.94
SHMT2-207ENST00000553837 RPS28P62857 69 aaKnown RBP9.2□□□□□ -0.94
SHMT2-207ENST00000553837 SLC25A29Q8N8R3 303 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms