RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RNF5Q99942 180 aa5.85□□□□□ -1.47
LIMA1-216ENST00000552909 CITED1Q99966 193 aa5.85□□□□□ -1.47
LIMA1-216ENST00000552909 C16orf95Q9H693 158 aa5.85□□□□□ -1.47
LIMA1-216ENST00000552909 TPSG1Q9NRR2 321 aa5.85□□□□□ -1.47
LIMA1-216ENST00000552909 TRBV19A0A075B6N1 114 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 SH2D1AO60880 128 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 CLEC3BP05452 202 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 PLNP26678 52 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 PLGLAQ15195 96 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 C8orf49Q96NF6 230 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 FBXL15Q9H469 300 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 ZNF702PQ9H963 129 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 PLXNB1O43157 2135 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 MYMXA0A1B0GTQ4 84 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 LINC01549A6NIU2 74 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 A8MWV9 139 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 RHODO00212 210 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 TNFRSF6BO95407 300 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 CRYGBP07316 175 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 NDUFV3P56181 108 aaKnown RBP5.84□□□□□ -1.47
LIMA1-216ENST00000552909 GAGE2BQ13066 116 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 MRGPRG-AS1Q2M3A8 158 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 GAGE2EQ4V326 116 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 PPP1R27Q86WC6 154 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 LYPD1Q8N2G4 141 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 C11orf44Q8N8P7 122 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 MYOZ3Q8TDC0 251 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 GAGE2DQ9UEU5 116 aa5.84□□□□□ -1.47
LIMA1-216ENST00000552909 NOTCH3Q9UM47 2321 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 A0A087WX48 190 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 IGHV3-21A0A0B4J1V1 117 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 FABP5P3A8MUU1 101 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 UBE2D3P61077 147 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 UBE2D2P62837 147 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 TTC32Q5I0X7 151 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 SIGLEC15Q6ZMC9 328 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 RNF185Q96GF1 192 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 SRSF8Q9BRL6 282 aaKnown RBP5.83□□□□□ -1.48
LIMA1-216ENST00000552909 TNFRSF18Q9Y5U5 241 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 CCDC179H3BU77 68 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 NBR2O15453 112 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 SNCGO76070 127 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 NDUFA3O95167 84 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 PRB4P10163 310 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-216ENST00000552909 ARL3P36405 182 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 ANXA2RQ3ZCQ2 193 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 PVRIGQ6DKI7 326 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 SFTA2Q6UW10 78 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 ZFP2Q6ZN57 461 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 Q8N2B8 174 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 Q8N8P6 123 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 NPBQ8NG41 125 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 C17orf77Q96MU5 243 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 SPANXA1Q9NS26 97 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 MEGF8Q7Z7M0 2845 aa5.83□□□□□ -1.48
LIMA1-216ENST00000552909 TRBV20-1A0A075B6N2 111 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 H3BVH4 76 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 APELAP0DMC3 54 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 IFITM1P13164 125 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 EBI3Q14213 229 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 SBSPONQ8IVN8 264 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 ANKRD29Q8N6D5 301 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 KIR2DL4Q99706 377 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 LINC01548A6NM66 108 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 M0R3E3 92 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 GAS8-AS1O95177 125 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 BRI3O95415 125 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 LGALS1P09382 135 aaKnown RBP5.82□□□□□ -1.48
LIMA1-216ENST00000552909 IGLC6P0CF74 106 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 ASIPP42127 132 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 RPL27AP46776 148 aaKnown RBP5.82□□□□□ -1.48
LIMA1-216ENST00000552909 UBE2D1P51668 147 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 Q8N6K4 173 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 SHANK2-AS3Q9BTD1 123 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 AAMDCQ9H7C9 122 aa5.82□□□□□ -1.48
LIMA1-216ENST00000552909 TCL1BO95988 128 aa5.81□□□□□ -1.48
LIMA1-216ENST00000552909 EGR2P11161 476 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-216ENST00000552909 LAGE3Q14657 143 aa5.81□□□□□ -1.48
LIMA1-216ENST00000552909 TMEM78Q5T7P6 136 aa5.81□□□□□ -1.48
LIMA1-216ENST00000552909 C10orf99Q6UWK7 81 aa5.81□□□□□ -1.48
LIMA1-216ENST00000552909 C5orf56Q8N8D9 126 aa5.81□□□□□ -1.48
LIMA1-216ENST00000552909 RASL11BQ9BPW5 248 aa5.81□□□□□ -1.48
LIMA1-216ENST00000552909 F8VRH5 84 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 H7C1H1 209 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 SRSF9Q13242 221 aaKnown RBP eCLIP5.8□□□□□ -1.48
LIMA1-216ENST00000552909 MSRB1Q9NZV6 116 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 LINC00527Q9UJ94 153 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 MOB4Q9Y3A3 225 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 AGRNO00468 2067 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 IGLV2-18A0A075B6J9 118 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 TRAV8-2A0A0B4J237 113 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 TRAV12-1A0A0B4J245 112 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 H3BRN7 92 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 SCGB1C2P0DMR2 95 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 CD28P10747 220 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 Q6Q795 121 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 SCGB1D4Q6XE38 83 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 COX8CQ7Z4L0 72 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 Q8N9W7 124 aa5.8□□□□□ -1.48
LIMA1-216ENST00000552909 TRAV4A0A0B4J268 109 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 153.1 ms