RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 TMEM88Q6PEY1 159 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 TMEM136Q6ZRR5 245 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 CBLN2Q8IUK8 224 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 AP1S3Q96PC3 154 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 MRPL16Q9NX20 251 aaKnown RBP6.78□□□□□ -1.32
LIMA1-211ENST00000552338 CELA1Q9UNI1 258 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 URGCP-MRPS24S4R325 110 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 U3KQK5 164 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 TENM3Q9P273 2699 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 NBEAL2Q6ZNJ1 2754 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 TGIF2-C20orf24A0A0A6YYL0 155 aa6.77□□□□□ -1.33
LIMA1-211ENST00000552338 HLA-DQA1P01909 254 aa6.77□□□□□ -1.33
LIMA1-211ENST00000552338 RAB4AP20338 218 aa6.77□□□□□ -1.33
LIMA1-211ENST00000552338 RAB4BP61018 213 aa6.77□□□□□ -1.33
LIMA1-211ENST00000552338 SLAQ13239 276 aa6.77□□□□□ -1.33
LIMA1-211ENST00000552338 FAM104BQ5XKR9 115 aa6.77□□□□□ -1.33
LIMA1-211ENST00000552338 RNF185Q96GF1 192 aa6.77□□□□□ -1.33
LIMA1-211ENST00000552338 TPPP3Q9BW30 176 aa6.77□□□□□ -1.33
LIMA1-211ENST00000552338 JPT2Q9H910 190 aa6.77□□□□□ -1.33
LIMA1-211ENST00000552338 MUC21A0A0G2JKD1 596 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 MUC21A0A140T8X8 626 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 TRBV6-4A0A1B0GX49 114 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 GAGE12BA1L429 117 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 H3BNG1 76 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 DEFB4AO15263 64 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 SCO1O75880 301 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 GAGE7O76087 117 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 IGHV3-53P01767 116 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 GAGE12FP0CL80 117 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 GAGE12GP0CL81 117 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 GAGE12IP0CL82 117 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 DAD1P61803 113 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 FHL2Q14192 279 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 MRPL54Q6P161 138 aaKnown RBP6.76□□□□□ -1.33
LIMA1-211ENST00000552338 SMIM15Q7Z3B0 74 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 OR4C5Q8NGB2 326 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 C11orf45Q8TAV5 145 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 ZNF479Q96JC4 524 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 FAM210BQ96KR6 192 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 SAMD10Q9BYL1 202 aa6.76□□□□□ -1.33
LIMA1-211ENST00000552338 TRGV2A0A075B6R0 118 aa6.75□□□□□ -1.33
LIMA1-211ENST00000552338 PRSS47A8MTI9 375 aa6.75□□□□□ -1.33
LIMA1-211ENST00000552338 PPBPP02775 128 aa6.75□□□□□ -1.33
LIMA1-211ENST00000552338 ATP5G1P05496 136 aa6.75□□□□□ -1.33
LIMA1-211ENST00000552338 GATA1P15976 413 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-211ENST00000552338 EMP1P54849 157 aa6.75□□□□□ -1.33
LIMA1-211ENST00000552338 C14orf178Q8N769 122 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-211ENST00000552338 MRAP2Q96G30 205 aa6.75□□□□□ -1.33
LIMA1-211ENST00000552338 TRBV10-1A0A0K0K1A3 114 aa6.74□□□□□ -1.33
LIMA1-211ENST00000552338 PHOX2AO14813 284 aa6.74□□□□□ -1.33
LIMA1-211ENST00000552338 SMIM17P0DL12 118 aa6.74□□□□□ -1.33
LIMA1-211ENST00000552338 DEFB130BP0DP73 79 aa6.74□□□□□ -1.33
LIMA1-211ENST00000552338 DEFB130AP0DP74 79 aa6.74□□□□□ -1.33
LIMA1-211ENST00000552338 CAMPP49913 170 aa6.74□□□□□ -1.33
LIMA1-211ENST00000552338 PRO0255Q9UI72 69 aa6.74□□□□□ -1.33
LIMA1-211ENST00000552338 LAMTOR2Q9Y2Q5 125 aa6.74□□□□□ -1.33
LIMA1-211ENST00000552338 MEGF8Q7Z7M0 2845 aa6.73□□□□□ -1.33
LIMA1-211ENST00000552338 TRBV6-5A0A0K0K1A5 114 aa6.73□□□□□ -1.33
LIMA1-211ENST00000552338 M0QY20 66 aa6.73□□□□□ -1.33
LIMA1-211ENST00000552338 PPP1R17O96001 155 aa6.73□□□□□ -1.33
LIMA1-211ENST00000552338 RAB5AP20339 215 aa6.73□□□□□ -1.33
LIMA1-211ENST00000552338 HOXA5P20719 270 aa6.73□□□□□ -1.33
LIMA1-211ENST00000552338 CRYBA4P53673 196 aa6.73□□□□□ -1.33
LIMA1-211ENST00000552338 AMN1Q8IY45 258 aa6.73□□□□□ -1.33
LIMA1-211ENST00000552338 DNAJC30Q96LL9 226 aa6.73□□□□□ -1.33
LIMA1-211ENST00000552338 COL7A1Q02388 2944 aa6.72□□□□□ -1.33
LIMA1-211ENST00000552338 A0A087WWL8 130 aa6.72□□□□□ -1.33
LIMA1-211ENST00000552338 H7C1H1 209 aa6.72□□□□□ -1.33
LIMA1-211ENST00000552338 LINC00694P0DN24 101 aa6.72□□□□□ -1.33
LIMA1-211ENST00000552338 RPL32P62910 135 aaKnown RBP6.72□□□□□ -1.33
LIMA1-211ENST00000552338 MRPL51Q4U2R6 128 aaKnown RBP6.72□□□□□ -1.33
LIMA1-211ENST00000552338 Q6ZSN1 163 aa6.72□□□□□ -1.33
LIMA1-211ENST00000552338 Q6ZTC4 211 aa6.72□□□□□ -1.33
LIMA1-211ENST00000552338 HHLA3Q9XRX5 114 aa6.72□□□□□ -1.33
LIMA1-211ENST00000552338 TRAV10A0A0B4J240 114 aa6.71□□□□□ -1.34
LIMA1-211ENST00000552338 A6NJY4 79 aa6.71□□□□□ -1.34
LIMA1-211ENST00000552338 APCSP02743 223 aa6.71□□□□□ -1.34
LIMA1-211ENST00000552338 NANOS2P60321 138 aaKnown RBP6.71□□□□□ -1.34
LIMA1-211ENST00000552338 SSTP61278 116 aa6.71□□□□□ -1.34
LIMA1-211ENST00000552338 RHOHQ15669 191 aa6.71□□□□□ -1.34
LIMA1-211ENST00000552338 SUMO4Q6EEV6 95 aa6.71□□□□□ -1.34
LIMA1-211ENST00000552338 SLC25A29Q8N8R3 303 aa6.71□□□□□ -1.34
LIMA1-211ENST00000552338 NRACQ8N912 160 aa6.71□□□□□ -1.34
LIMA1-211ENST00000552338 VSIG2Q96IQ7 327 aa6.71□□□□□ -1.34
LIMA1-211ENST00000552338 MRPL18Q9H0U6 180 aaKnown RBP6.71□□□□□ -1.34
LIMA1-211ENST00000552338 NIT2Q9NQR4 276 aa6.71□□□□□ -1.34
LIMA1-211ENST00000552338 TRAPPC1Q9Y5R8 145 aa6.71□□□□□ -1.34
LIMA1-211ENST00000552338 FBN3Q75N90 2809 aa6.7□□□□□ -1.34
LIMA1-211ENST00000552338 TRGV4A0A0C4DH28 118 aa6.7□□□□□ -1.34
LIMA1-211ENST00000552338 K7EQD1 137 aa6.7□□□□□ -1.34
LIMA1-211ENST00000552338 POLR2KP53803 58 aaKnown RBP6.7□□□□□ -1.34
LIMA1-211ENST00000552338 FAM74A4Q5TZK3 123 aa6.7□□□□□ -1.34
LIMA1-211ENST00000552338 ORMDL3Q8N138 153 aa6.7□□□□□ -1.34
LIMA1-211ENST00000552338 C20orf78Q9BR46 151 aa6.7□□□□□ -1.34
LIMA1-211ENST00000552338 ALKBH7Q9BT30 221 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-211ENST00000552338 TRBV7-3A0A075B6L6 115 aa6.69□□□□□ -1.34
LIMA1-211ENST00000552338 TRAV26-1A0A087WT03 109 aa6.69□□□□□ -1.34
LIMA1-211ENST00000552338 DEFB131BA0A096LNP1 70 aa6.69□□□□□ -1.34
LIMA1-211ENST00000552338 D6R8Y8 96 aa6.69□□□□□ -1.34
LIMA1-211ENST00000552338 CKS2P33552 79 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms