RNA–Protein interactions for RNA: ENST00000549347.1

RAPGEF3-220, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 4

Gene RAPGEF3, Length 573 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-220ENST00000549347 NAT8Q9UHE5 227 aa12.24□□□□□ -0.45
RAPGEF3-220ENST00000549347 LINC00588Q9Y4M8 146 aa12.24□□□□□ -0.45
RAPGEF3-220ENST00000549347 F2Z2F3 143 aa12.23□□□□□ -0.45
RAPGEF3-220ENST00000549347 GATCO43716 136 aaKnown RBP12.23□□□□□ -0.45
RAPGEF3-220ENST00000549347 ERVFC1-1P60608 527 aa12.23□□□□□ -0.45
RAPGEF3-220ENST00000549347 CACNG7P62955 275 aa12.23□□□□□ -0.45
RAPGEF3-220ENST00000549347 SOHLH1Q5JUK2 328 aa12.23□□□□□ -0.45
RAPGEF3-220ENST00000549347 PRADC1Q9BSG0 188 aa12.23□□□□□ -0.45
RAPGEF3-220ENST00000549347 TPPP3Q9BW30 176 aa12.23□□□□□ -0.45
RAPGEF3-220ENST00000549347 A0A087WWL8 130 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 MUC21A0A0G2JKD1 596 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 LOC100131303A0A0U1RQF7 123 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 MUC21A0A140T8X8 626 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 SRIP30626 198 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 RPL23P62829 140 aaKnown RBP12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 ESRGQ1W209 222 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 FAM74A4Q5TZK3 123 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 Q6ZSN1 163 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 ISOC2Q96AB3 205 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 AP1S3Q96PC3 154 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 CNFNQ9BYD5 112 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 OSTCQ9NRP0 149 aa12.22□□□□□ -0.45
RAPGEF3-220ENST00000549347 LYZL1Q6UWQ5 148 aa12.21□□□□□ -0.45
RAPGEF3-220ENST00000549347 NEGR1Q7Z3B1 354 aa12.21□□□□□ -0.45
RAPGEF3-220ENST00000549347 ZNRF2Q8NHG8 242 aa12.21□□□□□ -0.45
RAPGEF3-220ENST00000549347 UPK3BQ9BT76 320 aa12.21□□□□□ -0.45
RAPGEF3-220ENST00000549347 MRPS16Q9Y3D3 137 aaKnown RBP12.21□□□□□ -0.45
RAPGEF3-220ENST00000549347 A8MWL6 223 aa12.2□□□□□ -0.46
RAPGEF3-220ENST00000549347 ADIRFQ15847 76 aa12.2□□□□□ -0.46
RAPGEF3-220ENST00000549347 WDR73Q6P4I2 378 aa12.2□□□□□ -0.46
RAPGEF3-220ENST00000549347 SH2D6Q7Z4S9 175 aa12.2□□□□□ -0.46
RAPGEF3-220ENST00000549347 GTSF1Q8WW33 167 aa12.2□□□□□ -0.46
RAPGEF3-220ENST00000549347 LINC00694P0DN24 101 aa12.19□□□□□ -0.46
RAPGEF3-220ENST00000549347 C14orf178Q8N769 122 aaPredicted RBP12.19□□□□□ -0.46
RAPGEF3-220ENST00000549347 C15orf54Q8N8G6 183 aa12.19□□□□□ -0.46
RAPGEF3-220ENST00000549347 KIF25-AS1Q9Y6Z4 181 aa12.19□□□□□ -0.46
RAPGEF3-220ENST00000549347 SSTP61278 116 aa12.18□□□□□ -0.46
RAPGEF3-220ENST00000549347 LYPD5Q6UWN5 251 aa12.18□□□□□ -0.46
RAPGEF3-220ENST00000549347 MSRB1Q9NZV6 116 aa12.18□□□□□ -0.46
RAPGEF3-220ENST00000549347 V9GYV3 84 aa12.18□□□□□ -0.46
RAPGEF3-220ENST00000549347 FOXA3P55318 350 aaPredicted RBP12.17□□□□□ -0.46
RAPGEF3-220ENST00000549347 RAB4BP61018 213 aa12.17□□□□□ -0.46
RAPGEF3-220ENST00000549347 TSKUQ8WUA8 353 aa12.17□□□□□ -0.46
RAPGEF3-220ENST00000549347 GFRA4Q9GZZ7 299 aa12.17□□□□□ -0.46
RAPGEF3-220ENST00000549347 FAM231BA6NCW3 169 aa12.16□□□□□ -0.46
RAPGEF3-220ENST00000549347 TRGC1P0CF51 173 aa12.16□□□□□ -0.46
RAPGEF3-220ENST00000549347 NTF3P20783 257 aa12.16□□□□□ -0.46
RAPGEF3-220ENST00000549347 TIRAPP58753 221 aa12.16□□□□□ -0.46
RAPGEF3-220ENST00000549347 LINC00315P59091 139 aa12.16□□□□□ -0.46
RAPGEF3-220ENST00000549347 ZNF56Q15929 161 aa12.16□□□□□ -0.46
RAPGEF3-220ENST00000549347 UQCC3Q6UW78 93 aa12.16□□□□□ -0.46
RAPGEF3-220ENST00000549347 IGLV2-18A0A075B6J9 118 aa12.15□□□□□ -0.46
RAPGEF3-220ENST00000549347 TRBV10-1A0A0K0K1A3 114 aa12.15□□□□□ -0.46
RAPGEF3-220ENST00000549347 SMIM17P0DL12 118 aa12.15□□□□□ -0.46
RAPGEF3-220ENST00000549347 OR10G8Q8NGN5 311 aa12.15□□□□□ -0.46
RAPGEF3-220ENST00000549347 Q9UF83 564 aa12.15□□□□□ -0.46
RAPGEF3-220ENST00000549347 Q6ZR54 194 aa12.14□□□□□ -0.47
RAPGEF3-220ENST00000549347 GAGE12JA6NER3 117 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 HIGD1CA8MV81 97 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 EVI2AP22794 236 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 PNRC1Q12796 327 aaPredicted RBP12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 GAGE1Q13065 139 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 GAGE4Q13068 117 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 GAGE5Q13069 117 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 TWIST1Q15672 202 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 GAGE13Q4V321 117 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 ATP6V0E2Q8NHE4 81 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 PGLYRP4Q96LB8 373 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 DPH3P1Q9H4G8 78 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 Q9H8V8 135 aa12.13□□□□□ -0.47
RAPGEF3-220ENST00000549347 NBDYA0A0U1RRE5 68 aa12.11□□□□□ -0.47
RAPGEF3-220ENST00000549347 LINC00862A6NCI5 91 aa12.11□□□□□ -0.47
RAPGEF3-220ENST00000549347 MGPP08493 103 aa12.11□□□□□ -0.47
RAPGEF3-220ENST00000549347 RPL36AP83881 106 aaKnown RBP12.11□□□□□ -0.47
RAPGEF3-220ENST00000549347 COMMD7Q86VX2 200 aa12.11□□□□□ -0.47
RAPGEF3-220ENST00000549347 RPL36ALQ969Q0 106 aaKnown RBP12.11□□□□□ -0.47
RAPGEF3-220ENST00000549347 BORCS7Q96B45 105 aa12.11□□□□□ -0.47
RAPGEF3-220ENST00000549347 GTSF1LQ9H1H1 148 aa12.11□□□□□ -0.47
RAPGEF3-220ENST00000549347 TRBV7-3A0A075B6L6 115 aa12.1□□□□□ -0.47
RAPGEF3-220ENST00000549347 F5H697 171 aa12.1□□□□□ -0.47
RAPGEF3-220ENST00000549347 M0R2N4 97 aa12.1□□□□□ -0.47
RAPGEF3-220ENST00000549347 NEXN-AS1Q8NBZ9 246 aa12.1□□□□□ -0.47
RAPGEF3-220ENST00000549347 A0A1B0GUT8 65 aa12.09□□□□□ -0.47
RAPGEF3-220ENST00000549347 SMIM27A0A1W2PRY6 76 aa12.09□□□□□ -0.47
RAPGEF3-220ENST00000549347 TMEM218A2RU14 115 aa12.09□□□□□ -0.47
RAPGEF3-220ENST00000549347 SIVA1O15304 175 aa12.09□□□□□ -0.47
RAPGEF3-220ENST00000549347 ADCYAP1P18509 176 aa12.09□□□□□ -0.47
RAPGEF3-220ENST00000549347 UBE2D3P61077 147 aa12.09□□□□□ -0.47
RAPGEF3-220ENST00000549347 UBE2D2P62837 147 aa12.09□□□□□ -0.47
RAPGEF3-220ENST00000549347 TTC32Q5I0X7 151 aa12.09□□□□□ -0.47
RAPGEF3-220ENST00000549347 SUMO4Q6EEV6 95 aa12.09□□□□□ -0.47
RAPGEF3-220ENST00000549347 NUP35Q8NFH5 326 aa12.09□□□□□ -0.47
RAPGEF3-220ENST00000549347 NAT8BQ9UHF3 227 aa12.09□□□□□ -0.47
RAPGEF3-220ENST00000549347 H7C1H1 209 aa12.08□□□□□ -0.48
RAPGEF3-220ENST00000549347 M0QY20 66 aa12.08□□□□□ -0.48
RAPGEF3-220ENST00000549347 LELP1Q5T871 98 aa12.08□□□□□ -0.48
RAPGEF3-220ENST00000549347 WFDC10BQ8IUB3 73 aa12.08□□□□□ -0.48
RAPGEF3-220ENST00000549347 PPP1R2P9O14990 202 aa12.07□□□□□ -0.48
RAPGEF3-220ENST00000549347 SMIM15Q7Z3B0 74 aa12.07□□□□□ -0.48
RAPGEF3-220ENST00000549347 KRTAP1-5Q9BYS1 174 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms