RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 NIT1Q86X76 327 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 YIPF6Q96EC8 236 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 DPH3Q96FX2 82 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 KRTAP4-9Q9BYQ8 210 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 Q9UF83 564 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 NDUFAF8A1L188 74 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 ANKRD65E5RJM6 399 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 H7C423 109 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 METTL15P1P0C7V9 234 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 PYYP10082 97 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 POLR2GP62487 172 aaKnown RBP eCLIP4.03□□□□□ -1.76
LIMA1-204ENST00000549064 PRR3P79522 188 aaKnown RBP4.03□□□□□ -1.76
LIMA1-204ENST00000549064 IL18Q14116 193 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 ZNF266Q14584 549 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 ZC2HC1BQ5TFG8 222 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 CFAP126Q5VTH2 177 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 IZUMO2Q6UXV1 221 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 ZNF546Q86UE3 836 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 C2orf50Q96LR7 162 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 MGST2Q99735 147 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 BCL7BQ9BQE9 202 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 OR51M1Q9H341 326 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 NPVFQ9HCQ7 196 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 NUDT15Q9NV35 164 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 PSENENQ9NZ42 101 aa4.03□□□□□ -1.76
LIMA1-204ENST00000549064 CCDC59Q9P031 241 aaKnown RBP4.03□□□□□ -1.76
LIMA1-204ENST00000549064 A0A1B0GWB2 263 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 L7N2F9 121 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 TYMSP04818 313 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 LINC00694P0DN24 101 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 HIST1H1EP10412 219 aaKnown RBP4.02□□□□□ -1.77
LIMA1-204ENST00000549064 SLC25A6P12236 298 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 ZNF138P52744 262 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 MIC13Q5XKP0 118 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 Q6AWC8 147 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 CLVS1Q8IUQ0 354 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-204ENST00000549064 C7orf33Q8WU49 177 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 GEMIN7Q9H840 131 aaKnown RBP4.02□□□□□ -1.77
LIMA1-204ENST00000549064 PRELID1Q9Y255 219 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 TIMM9Q9Y5J7 89 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 URGCP-MRPS24S4R325 110 aa4.02□□□□□ -1.77
LIMA1-204ENST00000549064 MUC21A0A0G2JKD1 596 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 DUXBA0A1W2PPF3 345 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 TEX46H3BTG2 121 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 AKAIN1P0CW23 69 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 CAV2P51636 162 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 NCS1P62166 190 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 RPL19P84098 196 aaKnown RBP4.01□□□□□ -1.77
LIMA1-204ENST00000549064 RAB31Q13636 194 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 ENHOQ6UWT2 76 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 CYB561D1Q8N8Q1 229 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 SPACA4Q8TDM5 124 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 GTSF1Q8WW33 167 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 PRRT1Q99946 306 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 SAMD10Q9BYL1 202 aa4.01□□□□□ -1.77
LIMA1-204ENST00000549064 A0A087WX48 190 aa4□□□□□ -1.77
LIMA1-204ENST00000549064 SSSCA1O60232 199 aa4□□□□□ -1.77
LIMA1-204ENST00000549064 MGST1P10620 155 aaKnown RBP4□□□□□ -1.77
LIMA1-204ENST00000549064 INPP1P49441 399 aa4□□□□□ -1.77
LIMA1-204ENST00000549064 RPL32P62910 135 aaKnown RBP4□□□□□ -1.77
LIMA1-204ENST00000549064 Q0VG73 95 aa4□□□□□ -1.77
LIMA1-204ENST00000549064 SPINK6Q6UWN8 80 aa4□□□□□ -1.77
LIMA1-204ENST00000549064 TMEM14EPQ6UXP3 125 aa4□□□□□ -1.77
LIMA1-204ENST00000549064 C20orf85Q9H1P6 137 aa4□□□□□ -1.77
LIMA1-204ENST00000549064 PLAC8Q9NZF1 115 aa4□□□□□ -1.77
LIMA1-204ENST00000549064 A0A087WWC5 75 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 FNDC10F2Z333 226 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 H7C1H1 209 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 SEC11BP0C7V7 166 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 VBP1P61758 197 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 SSBP1Q04837 148 aaKnown RBP3.99□□□□□ -1.77
LIMA1-204ENST00000549064 PDE6HQ13956 83 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 C14orf178Q8N769 122 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-204ENST00000549064 OR2T35Q8NGX2 323 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 LYPD6BQ8NI32 183 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 RNF185Q96GF1 192 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 KRTAP4-7Q9BYR0 210 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 SH3BGRL3Q9H299 93 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 TMEM14CQ9P0S9 112 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 VAX2Q9UIW0 290 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 RAB26Q9ULW5 256 aa3.99□□□□□ -1.77
LIMA1-204ENST00000549064 CHTOPQ9Y3Y2 248 aaKnown RBP3.99□□□□□ -1.77
LIMA1-204ENST00000549064 IGHV3-64A0A075B6Q5 118 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 PGPA6NDG6 321 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 F6UZH7 168 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 CRPP02741 224 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 ELOBQ15370 118 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 PRR4Q16378 134 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 KRTAP26-1Q6PEX3 210 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 CLPSL2Q6UWE3 100 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 OR10G9Q8NGN4 311 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 SMIM4Q8WVI0 70 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 PHYHIPLQ96FC7 376 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 SMIM8Q96KF7 97 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 SCGB3A2Q96PL1 93 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 PFDN5Q99471 154 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 KRTAP4-11Q9BYQ6 195 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 MIXL1Q9H2W2 232 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 MCUBQ9NWR8 336 aa3.98□□□□□ -1.77
LIMA1-204ENST00000549064 SCP2D1Q9UJQ7 156 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms