RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	SAMD10	Q9BYL1	202 aa		6.63	□□□□□ -1.35
DDX55-208	ENST00000541259		U3KQK5	164 aa		6.63	□□□□□ -1.35
DDX55-208	ENST00000541259	IGHV4-4	A0A075B6R2	117 aa		6.62	□□□□□ -1.35
DDX55-208	ENST00000541259	TGIF2-C20orf24	A0A0A6YYL0	155 aa		6.62	□□□□□ -1.35
DDX55-208	ENST00000541259	CXorf65	A6NEN9	183 aa		6.62	□□□□□ -1.35
DDX55-208	ENST00000541259	IGHV3-53	P01767	116 aa		6.62	□□□□□ -1.35
DDX55-208	ENST00000541259	NANOS2	P60321	138 aa	Known RBP	6.62	□□□□□ -1.35
DDX55-208	ENST00000541259	C12orf74	Q32Q52	190 aa		6.62	□□□□□ -1.35
DDX55-208	ENST00000541259	LGALS9B	Q3B8N2	356 aa		6.62	□□□□□ -1.35
DDX55-208	ENST00000541259	WDR73	Q6P4I2	378 aa		6.62	□□□□□ -1.35
DDX55-208	ENST00000541259	SYT8	Q8NBV8	401 aa		6.62	□□□□□ -1.35
DDX55-208	ENST00000541259	YPEL4	Q96NS1	127 aa		6.62	□□□□□ -1.35
DDX55-208	ENST00000541259	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	6.62	□□□□□ -1.35
DDX55-208	ENST00000541259	TRGV2	A0A075B6R0	118 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259		A0A087WWL8	130 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	IGHV3-73	A0A0B4J1V6	119 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259		A0A1B0GXF2	115 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	RS1	O15537	224 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	PAX4	O43316	350 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	CRYGD	P07320	174 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	EVI2A	P22794	236 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	S100P	P25815	95 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	CAMP	P49913	170 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	DAD1	P61803	113 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	ELOB	Q15370	118 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	CFAP126	Q5VTH2	177 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	KCNIP4	Q6PIL6	250 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	C14orf178	Q8N769	122 aa	Predicted RBP	6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	C11orf45	Q8TAV5	145 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	BORCS7	Q96B45	105 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	ZNF479	Q96JC4	524 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	BTF3L4	Q96K17	158 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	CDIP1	Q9H305	208 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	EDA2R	Q9HAV5	297 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	SMCO4	Q9NRQ5	59 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	KIF25-AS1	Q9Y6Z4	181 aa		6.61	□□□□□ -1.35
DDX55-208	ENST00000541259	LINC00315	P59091	139 aa		6.6	□□□□□ -1.35
DDX55-208	ENST00000541259	RIG	Q13278	110 aa		6.6	□□□□□ -1.35
DDX55-208	ENST00000541259	PIK3CD-AS1	Q5SR53	167 aa		6.6	□□□□□ -1.35
DDX55-208	ENST00000541259	UFSP1	Q6NVU6	142 aa		6.6	□□□□□ -1.35
DDX55-208	ENST00000541259	OR4C5	Q8NGB2	326 aa		6.6	□□□□□ -1.35
DDX55-208	ENST00000541259	TRAV9-1	A0A075B6T8	112 aa		6.59	□□□□□ -1.35
DDX55-208	ENST00000541259	TRAV4	A0A0B4J268	109 aa		6.59	□□□□□ -1.35
DDX55-208	ENST00000541259		A8MWV9	139 aa		6.59	□□□□□ -1.35
DDX55-208	ENST00000541259	HTN3	P15516	51 aa		6.59	□□□□□ -1.35
DDX55-208	ENST00000541259	HOXA5	P20719	270 aa		6.59	□□□□□ -1.35
DDX55-208	ENST00000541259	FAM74A4	Q5TZK3	123 aa		6.59	□□□□□ -1.35
DDX55-208	ENST00000541259		Q6ZSN1	163 aa		6.59	□□□□□ -1.35
DDX55-208	ENST00000541259		Q6ZTC4	211 aa		6.59	□□□□□ -1.35
DDX55-208	ENST00000541259	ATP5L2	Q7Z4Y8	100 aa		6.59	□□□□□ -1.35
DDX55-208	ENST00000541259	NDUFAF3	Q9BU61	184 aa		6.59	□□□□□ -1.35
DDX55-208	ENST00000541259	TRBV24-1	A0A075B6N3	115 aa		6.58	□□□□□ -1.36
DDX55-208	ENST00000541259	TEX48	A0A1B0GUV7	120 aa		6.58	□□□□□ -1.36
DDX55-208	ENST00000541259	TRGC1	P0CF51	173 aa		6.58	□□□□□ -1.36
DDX55-208	ENST00000541259	HBB	P68871	147 aa		6.58	□□□□□ -1.36
DDX55-208	ENST00000541259	FHL2	Q14192	279 aa		6.58	□□□□□ -1.36
DDX55-208	ENST00000541259	TMEM136	Q6ZRR5	245 aa		6.58	□□□□□ -1.36
DDX55-208	ENST00000541259	RNF185	Q96GF1	192 aa		6.58	□□□□□ -1.36
DDX55-208	ENST00000541259	C18orf15	Q96N68	181 aa		6.58	□□□□□ -1.36
DDX55-208	ENST00000541259	AP1S3	Q96PC3	154 aa		6.58	□□□□□ -1.36
DDX55-208	ENST00000541259	TMEM191A	Q9H0A3	160 aa		6.58	□□□□□ -1.36
DDX55-208	ENST00000541259	CSMD3	Q7Z407	3707 aa		6.58	□□□□□ -1.36
DDX55-208	ENST00000541259	PLEC	Q15149	4684 aa	Known RBP	6.58	□□□□□ -1.36
DDX55-208	ENST00000541259		A0A1B0GW15	77 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259	COLCA2	A8K830	154 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259	ATP5G1	P05496	136 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259	MGP	P08493	103 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259	SMIM17	P0DL12	118 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259	RAB4B	P61018	213 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259	AMN1	Q8IY45	258 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259	GATD1	Q8NB37	220 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259	FAM210B	Q96KR6	192 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259	DPH3P1	Q9H4G8	78 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259		Q9UF83	564 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259	STARD9	Q9P2P6	4700 aa		6.57	□□□□□ -1.36
DDX55-208	ENST00000541259	TRAV26-2	A0A0B4J265	109 aa		6.56	□□□□□ -1.36
DDX55-208	ENST00000541259	TRGV4	A0A0C4DH28	118 aa		6.56	□□□□□ -1.36
DDX55-208	ENST00000541259		F5H697	171 aa		6.56	□□□□□ -1.36
DDX55-208	ENST00000541259		F5H768	121 aa		6.56	□□□□□ -1.36
DDX55-208	ENST00000541259	GAS8-AS1	O95177	125 aa		6.56	□□□□□ -1.36
DDX55-208	ENST00000541259	RAB4A	P20338	218 aa		6.56	□□□□□ -1.36
DDX55-208	ENST00000541259	ZNF56	Q15929	161 aa		6.56	□□□□□ -1.36
DDX55-208	ENST00000541259	FAM104B	Q5XKR9	115 aa		6.56	□□□□□ -1.36
DDX55-208	ENST00000541259	ZFP2	Q6ZN57	461 aa		6.56	□□□□□ -1.36
DDX55-208	ENST00000541259	SMIM15	Q7Z3B0	74 aa		6.56	□□□□□ -1.36
DDX55-208	ENST00000541259		A0A0J9YY99	117 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	SMKR1	H3BMG3	65 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	ZNF561-AS1	K7EIQ3	104 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	RHOD	O00212	210 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	S100A8	P05109	93 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259		P0DMU3	169 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	FAM231A	P0DMU4	169 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	FAM231C	P0DMU5	169 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	GATA1	P15976	413 aa	Predicted RBP	6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	SLA	Q13239	276 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	MRPL51	Q4U2R6	128 aa	Known RBP	6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	SUMO4	Q6EEV6	95 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	RASL11A	Q6T310	242 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	SLC25A29	Q8N8R3	303 aa		6.55	□□□□□ -1.36
DDX55-208	ENST00000541259	DEFB131B	A0A096LNP1	70 aa		6.54	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms