RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ATP5J2P56134 94 aa14.38□□□□□ -0.11
VPS28-213ENST00000530983 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.38□□□□□ -0.113e-7■■■■□ 19.9
VPS28-213ENST00000530983 ID1P41134 155 aa14.38□□□□□ -0.11
VPS28-213ENST00000530983 DEFB104AQ8WTQ1 72 aa14.38□□□□□ -0.11
VPS28-213ENST00000530983 TP53TG1Q9Y2A0 90 aa14.38□□□□□ -0.11
VPS28-213ENST00000530983 A0A087WWL8 130 aa14.37□□□□□ -0.11
VPS28-213ENST00000530983 TRAV12-3A0A0B4J271 114 aa14.37□□□□□ -0.11
VPS28-213ENST00000530983 COX6B1P14854 86 aa14.37□□□□□ -0.11
VPS28-213ENST00000530983 MORN3Q6PF18 240 aaPredicted RBP14.37□□□□□ -0.11
VPS28-213ENST00000530983 ZFP2Q6ZN57 461 aa14.37□□□□□ -0.11
VPS28-213ENST00000530983 IGIPA6NJ69 53 aa14.37□□□□□ -0.11
VPS28-213ENST00000530983 CD7P09564 240 aa14.37□□□□□ -0.11
VPS28-213ENST00000530983 CKS1BP61024 79 aa14.37□□□□□ -0.11
VPS28-213ENST00000530983 IGLV4-69A0A075B6H9 119 aa14.36□□□□□ -0.11
VPS28-213ENST00000530983 ZNF815PA8K554 130 aa14.36□□□□□ -0.11
VPS28-213ENST00000530983 C11orf86A6NJI1 115 aa14.35□□□□□ -0.11
VPS28-213ENST00000530983 PSMB8P28062 276 aa14.35□□□□□ -0.11
VPS28-213ENST00000530983 RPL39P62891 51 aaKnown RBP14.35□□□□□ -0.11
VPS28-213ENST00000530983 PLEKHB2Q96CS7 222 aa14.35□□□□□ -0.11
VPS28-213ENST00000530983 CFAP46Q8IYW2 2715 aa14.35□□□□□ -0.11
VPS28-213ENST00000530983 APOMO95445 188 aa14.35□□□□□ -0.11
VPS28-213ENST00000530983 CSPG4Q6UVK1 2322 aa14.34□□□□□ -0.11
VPS28-213ENST00000530983 TCTEX1D4Q5JR98 221 aa14.34□□□□□ -0.11
VPS28-213ENST00000530983 F5H697 171 aa14.33□□□□□ -0.11
VPS28-213ENST00000530983 VCYO14598 125 aa14.33□□□□□ -0.11
VPS28-213ENST00000530983 EMP1P54849 157 aa14.33□□□□□ -0.11
VPS28-213ENST00000530983 SCGB2A2Q13296 93 aa14.33□□□□□ -0.11
VPS28-213ENST00000530983 C10orf99Q6UWK7 81 aa14.33□□□□□ -0.11
VPS28-213ENST00000530983 KLHL30-AS1Q8NEE0 82 aa14.33□□□□□ -0.11
VPS28-213ENST00000530983 HOXA3O43365 443 aaPredicted RBP14.33□□□□□ -0.12
VPS28-213ENST00000530983 ZNF688P0C7X2 276 aa14.33□□□□□ -0.12
VPS28-213ENST00000530983 SMCPP49901 116 aaPredicted RBP14.33□□□□□ -0.12
VPS28-213ENST00000530983 Q5PR19 223 aa14.33□□□□□ -0.12
VPS28-213ENST00000530983 KIR2DL4Q99706 377 aa14.33□□□□□ -0.12
VPS28-213ENST00000530983 ZNF580Q9UK33 172 aa14.33□□□□□ -0.12
VPS28-213ENST00000530983 PKD1L2Q7Z442 2459 aa14.33□□□□□ -0.12
VPS28-213ENST00000530983 CSMD2Q7Z408 3487 aa14.33□□□□□ -0.12
VPS28-213ENST00000530983 SDHAF1A6NFY7 115 aa14.32□□□□□ -0.12
VPS28-213ENST00000530983 FOXI1Q12951 378 aa14.32□□□□□ -0.12
VPS28-213ENST00000530983 PMVKQ15126 192 aa14.32□□□□□ -0.12
VPS28-213ENST00000530983 SCGB1D4Q6XE38 83 aa14.32□□□□□ -0.12
VPS28-213ENST00000530983 C9orf85Q96MD7 179 aa14.32□□□□□ -0.12
VPS28-213ENST00000530983 PGPEP1Q9NXJ5 209 aa14.32□□□□□ -0.12
VPS28-213ENST00000530983 IGHV3-16A0A0C4DH30 117 aa14.32□□□□□ -0.12
VPS28-213ENST00000530983 LINC01549A6NIU2 74 aa14.32□□□□□ -0.12
VPS28-213ENST00000530983 LGALS9O00182 355 aa14.32□□□□□ -0.12
VPS28-213ENST00000530983 FLNCQ14315 2725 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 TRAV12-2A0A075B6T6 113 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 TRBV27A0A0K0K1C4 114 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 B4DSR2 109 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 CFAP126Q5VTH2 177 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 ATP6V0E2Q8NHE4 81 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 C1QTNF4Q9BXJ3 329 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 MDFICQ9P1T7 246 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 IGHV4-59P01825 116 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 FAM74A4Q5TZK3 123 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 ODF3Q96PU9 254 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 TIMM17AQ99595 171 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 CDIP1Q9H305 208 aa14.31□□□□□ -0.12
VPS28-213ENST00000530983 A0A0J9YX75 114 aa14.3□□□□□ -0.12
VPS28-213ENST00000530983 IGKV3-20P01619 116 aa14.3□□□□□ -0.12
VPS28-213ENST00000530983 PAPPA-AS1Q5QFB9 102 aa14.3□□□□□ -0.12
VPS28-213ENST00000530983 SYT8Q8NBV8 401 aa14.3□□□□□ -0.12
VPS28-213ENST00000530983 TMEM141Q96I45 108 aa14.3□□□□□ -0.12
VPS28-213ENST00000530983 TRBV6-5A0A0K0K1A5 114 aa14.3□□□□□ -0.12
VPS28-213ENST00000530983 NFE4Q86UQ8 179 aa14.3□□□□□ -0.12
VPS28-213ENST00000530983 MRPL16Q9NX20 251 aaKnown RBP14.3□□□□□ -0.12
VPS28-213ENST00000530983 TRAV26-1A0A087WT03 109 aa14.29□□□□□ -0.12
VPS28-213ENST00000530983 UBE2D1P51668 147 aa14.29□□□□□ -0.12
VPS28-213ENST00000530983 Q8N1Y9 231 aa14.29□□□□□ -0.12
VPS28-213ENST00000530983 SRSF9Q13242 221 aaKnown RBP eCLIP14.28□□□□□ -0.12
VPS28-213ENST00000530983 FHL3Q13643 280 aa14.28□□□□□ -0.12
VPS28-213ENST00000530983 DEFB112Q30KQ8 113 aa14.28□□□□□ -0.12
VPS28-213ENST00000530983 DLX4Q92988 240 aaPredicted RBP14.28□□□□□ -0.12
VPS28-213ENST00000530983 K7EQG2 157 aa14.27□□□□□ -0.12
VPS28-213ENST00000530983 HERVK_113P61574 105 aa14.27□□□□□ -0.12
VPS28-213ENST00000530983 SNRPD3P62318 126 aaKnown RBP14.27□□□□□ -0.12
VPS28-213ENST00000530983 SFTA2Q6UW10 78 aa14.27□□□□□ -0.12
VPS28-213ENST00000530983 ZNRF2Q8NHG8 242 aa14.27□□□□□ -0.12
VPS28-213ENST00000530983 A0A0J9YY99 117 aa14.27□□□□□ -0.13
VPS28-213ENST00000530983 TMEM238LA0A1B0GVL6 79 aa14.27□□□□□ -0.13
VPS28-213ENST00000530983 A6NJY4 79 aa14.27□□□□□ -0.13
VPS28-213ENST00000530983 M0QY20 66 aa14.27□□□□□ -0.13
VPS28-213ENST00000530983 TSPEAR-AS2P59090 65 aa14.27□□□□□ -0.13
VPS28-213ENST00000530983 ZNF876PQ49A33 203 aa14.27□□□□□ -0.13
VPS28-213ENST00000530983 ZNF256Q9Y2P7 627 aaPredicted RBP14.27□□□□□ -0.13
VPS28-213ENST00000530983 UTP20O75691 2785 aaKnown RBP14.27□□□□□ -0.13
VPS28-213ENST00000530983 DOPEY1Q5JWR5 2465 aa14.27□□□□□ -0.13
VPS28-213ENST00000530983 ZNF56Q15929 161 aa14.26□□□□□ -0.13
VPS28-213ENST00000530983 SVIPQ8NHG7 77 aa14.26□□□□□ -0.13
VPS28-213ENST00000530983 GEMIN7Q9H840 131 aaKnown RBP14.26□□□□□ -0.13
VPS28-213ENST00000530983 USP9XQ93008 2570 aaPredicted RBP14.26□□□□□ -0.13
VPS28-213ENST00000530983 SPINK13Q1W4C9 94 aa14.26□□□□□ -0.13
VPS28-213ENST00000530983 TSPAN13O95857 204 aa14.25□□□□□ -0.13
VPS28-213ENST00000530983 GATA3P23771 443 aa14.25□□□□□ -0.13
VPS28-213ENST00000530983 PSMB2P49721 201 aa14.25□□□□□ -0.13
VPS28-213ENST00000530983 DSCR9P59020 149 aa14.25□□□□□ -0.13
VPS28-213ENST00000530983 IGHV1OR15-1A0A075B7D0 117 aa14.25□□□□□ -0.13
VPS28-213ENST00000530983 TMEM170BQ5T4T1 132 aa14.25□□□□□ -0.13
VPS28-213ENST00000530983 NRGNQ92686 78 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms