RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 SCGB1D4Q6XE38 83 aa14.51□□□□□ -0.09
PCF11-203ENST00000530304 TMEM238C9JI98 176 aa14.51□□□□□ -0.09
PCF11-203ENST00000530304 ZNF688P0C7X2 276 aa14.51□□□□□ -0.09
PCF11-203ENST00000530304 SDHAF1A6NFY7 115 aa14.5□□□□□ -0.09
PCF11-203ENST00000530304 PMVKQ15126 192 aa14.5□□□□□ -0.09
PCF11-203ENST00000530304 C10orf99Q6UWK7 81 aa14.5□□□□□ -0.09
PCF11-203ENST00000530304 LINC01549A6NIU2 74 aa14.49□□□□□ -0.09
PCF11-203ENST00000530304 IGKV3-20P01619 116 aa14.49□□□□□ -0.09
PCF11-203ENST00000530304 FAM74A4Q5TZK3 123 aa14.49□□□□□ -0.09
PCF11-203ENST00000530304 MORN3Q6PF18 240 aaPredicted RBP14.49□□□□□ -0.09
PCF11-203ENST00000530304 MDFICQ9P1T7 246 aa14.49□□□□□ -0.09
PCF11-203ENST00000530304 CRYBG3Q68DQ2 2970 aa14.49□□□□□ -0.09
PCF11-203ENST00000530304 TRAV12-2A0A075B6T6 113 aa14.49□□□□□ -0.09
PCF11-203ENST00000530304 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.49□□□□□ -0.09
PCF11-203ENST00000530304 IGHV3-16A0A0C4DH30 117 aa14.48□□□□□ -0.09
PCF11-203ENST00000530304 B4DSR2 109 aa14.48□□□□□ -0.09
PCF11-203ENST00000530304 LGALS9O00182 355 aa14.48□□□□□ -0.09
PCF11-203ENST00000530304 PAPPA-AS1Q5QFB9 102 aa14.48□□□□□ -0.09
PCF11-203ENST00000530304 TMEM141Q96I45 108 aa14.48□□□□□ -0.09
PCF11-203ENST00000530304 SPANXB1Q9NS25 103 aaPredicted RBP14.48□□□□□ -0.09
PCF11-203ENST00000530304 SRSF9Q13242 221 aaKnown RBP eCLIP14.48□□□□□ -0.094e-6■■□□□ 11.4
PCF11-203ENST00000530304 C9orf85Q96MD7 179 aa14.48□□□□□ -0.09
PCF11-203ENST00000530304 ZNF580Q9UK33 172 aa14.48□□□□□ -0.09
PCF11-203ENST00000530304 SPG11Q96JI7 2443 aa14.48□□□□□ -0.09
PCF11-203ENST00000530304 TRBV27A0A0K0K1C4 114 aa14.47□□□□□ -0.09
PCF11-203ENST00000530304 TIMM17AQ99595 171 aa14.47□□□□□ -0.09
PCF11-203ENST00000530304 A0A0J9YX75 114 aa14.47□□□□□ -0.09
PCF11-203ENST00000530304 IGHV4-59P01825 116 aa14.47□□□□□ -0.09
PCF11-203ENST00000530304 HERVK_113P61574 105 aa14.46□□□□□ -0.09
PCF11-203ENST00000530304 ODF3Q96PU9 254 aa14.46□□□□□ -0.09
PCF11-203ENST00000530304 PGPEP1Q9NXJ5 209 aa14.46□□□□□ -0.09
PCF11-203ENST00000530304 TRBV6-5A0A0K0K1A5 114 aa14.46□□□□□ -0.09
PCF11-203ENST00000530304 TMEM238LA0A1B0GVL6 79 aa14.46□□□□□ -0.09
PCF11-203ENST00000530304 A6NJY4 79 aa14.46□□□□□ -0.09
PCF11-203ENST00000530304 SNRPD3P62318 126 aaKnown RBP14.46□□□□□ -0.09
PCF11-203ENST00000530304 GAGE13Q4V321 117 aa14.46□□□□□ -0.09
PCF11-203ENST00000530304 Q8N1Y9 231 aa14.46□□□□□ -0.09
PCF11-203ENST00000530304 ZNF256Q9Y2P7 627 aaPredicted RBP14.46□□□□□ -0.09
PCF11-203ENST00000530304 SH2D6Q7Z4S9 175 aa14.45□□□□□ -0.1
PCF11-203ENST00000530304 MTURNQ8N3F0 131 aa14.45□□□□□ -0.1
PCF11-203ENST00000530304 DEFB112Q30KQ8 113 aa14.45□□□□□ -0.1
PCF11-203ENST00000530304 ETDBQ3ZM63 59 aa14.45□□□□□ -0.1
PCF11-203ENST00000530304 MRPL16Q9NX20 251 aaKnown RBP14.45□□□□□ -0.1
PCF11-203ENST00000530304 ZNF56Q15929 161 aa14.45□□□□□ -0.1
PCF11-203ENST00000530304 ZNRF2Q8NHG8 242 aa14.45□□□□□ -0.1
PCF11-203ENST00000530304 PRO0461Q9UI25 63 aa14.45□□□□□ -0.1
PCF11-203ENST00000530304 CSMD2Q7Z408 3487 aa14.44□□□□□ -0.1
PCF11-203ENST00000530304 M0QY20 66 aa14.44□□□□□ -0.1
PCF11-203ENST00000530304 UBE2D1P51668 147 aa14.44□□□□□ -0.1
PCF11-203ENST00000530304 TMEM170BQ5T4T1 132 aa14.44□□□□□ -0.1
PCF11-203ENST00000530304 SYT8Q8NBV8 401 aa14.44□□□□□ -0.1
PCF11-203ENST00000530304 CSPG4Q6UVK1 2322 aa14.44□□□□□ -0.1
PCF11-203ENST00000530304 A0A0J9YY99 117 aa14.44□□□□□ -0.1
PCF11-203ENST00000530304 K7EQG2 157 aa14.44□□□□□ -0.1
PCF11-203ENST00000530304 ZNF876PQ49A33 203 aa14.44□□□□□ -0.1
PCF11-203ENST00000530304 SPINK13Q1W4C9 94 aa14.43□□□□□ -0.1
PCF11-203ENST00000530304 GATA3P23771 443 aa14.42□□□□□ -0.1
PCF11-203ENST00000530304 TSPEAR-AS2P59090 65 aa14.42□□□□□ -0.1
PCF11-203ENST00000530304 IGHV1OR15-1A0A075B7D0 117 aa14.42□□□□□ -0.1
PCF11-203ENST00000530304 SYNJ2BPP57105 145 aa14.41□□□□□ -0.1
PCF11-203ENST00000530304 NRGNQ92686 78 aa14.41□□□□□ -0.1
PCF11-203ENST00000530304 OPRPNQ99935 248 aaPredicted RBP14.4□□□□□ -0.1
PCF11-203ENST00000530304 TMEM89A2RUT3 159 aa14.4□□□□□ -0.1
PCF11-203ENST00000530304 J3QR89 54 aa14.4□□□□□ -0.1
PCF11-203ENST00000530304 APOMO95445 188 aa14.4□□□□□ -0.1
PCF11-203ENST00000530304 TSPAN13O95857 204 aa14.4□□□□□ -0.1
PCF11-203ENST00000530304 TRPT1Q86TN4 253 aaKnown RBP14.4□□□□□ -0.1
PCF11-203ENST00000530304 SPAG8Q99932 426 aaPredicted RBP14.4□□□□□ -0.1
PCF11-203ENST00000530304 NSUN5P1Q3KNT7 163 aa14.39□□□□□ -0.11
PCF11-203ENST00000530304 DUX5Q96PT3 197 aa14.39□□□□□ -0.11
PCF11-203ENST00000530304 P0DMU3 169 aa14.38□□□□□ -0.11
PCF11-203ENST00000530304 FAM231AP0DMU4 169 aa14.38□□□□□ -0.11
PCF11-203ENST00000530304 FAM231CP0DMU5 169 aa14.38□□□□□ -0.11
PCF11-203ENST00000530304 RHOHQ15669 191 aa14.38□□□□□ -0.11
PCF11-203ENST00000530304 SFTA2Q6UW10 78 aa14.38□□□□□ -0.11
PCF11-203ENST00000530304 TSSC4Q9Y5U2 329 aaPredicted RBP14.38□□□□□ -0.11
PCF11-203ENST00000530304 SLC25A29Q8N8R3 303 aa14.38□□□□□ -0.11
PCF11-203ENST00000530304 CFAP46Q8IYW2 2715 aa14.37□□□□□ -0.11
PCF11-203ENST00000530304 IGHV3-30P01768 117 aa14.37□□□□□ -0.11
PCF11-203ENST00000530304 IGHV3-30-5P0DP03 117 aa14.37□□□□□ -0.11
PCF11-203ENST00000530304 NDUFA11Q86Y39 141 aa14.37□□□□□ -0.11
PCF11-203ENST00000530304 DLX4Q92988 240 aaPredicted RBP14.37□□□□□ -0.11
PCF11-203ENST00000530304 AMELXQ99217 191 aa14.37□□□□□ -0.11
PCF11-203ENST00000530304 LOC107984156A0A0G2JMH3 177 aa14.37□□□□□ -0.11
PCF11-203ENST00000530304 J3QQQ9 107 aa14.37□□□□□ -0.11
PCF11-203ENST00000530304 ARL17AQ8IVW1 177 aa14.37□□□□□ -0.11
PCF11-203ENST00000530304 PKD1L2Q7Z442 2459 aa14.36□□□□□ -0.11
PCF11-203ENST00000530304 GAGE12HA6NDE8 117 aa14.36□□□□□ -0.11
PCF11-203ENST00000530304 NFE4Q86UQ8 179 aa14.36□□□□□ -0.11
PCF11-203ENST00000530304 LINC01356Q8N9X3 169 aa14.36□□□□□ -0.11
PCF11-203ENST00000530304 DSCR9P59020 149 aa14.36□□□□□ -0.11
PCF11-203ENST00000530304 PSMB2P49721 201 aa14.35□□□□□ -0.11
PCF11-203ENST00000530304 INSL3P51460 131 aa14.35□□□□□ -0.11
PCF11-203ENST00000530304 C20orf203Q8NBC4 194 aa14.35□□□□□ -0.11
PCF11-203ENST00000530304 GTSF1LQ9H1H1 148 aa14.35□□□□□ -0.11
PCF11-203ENST00000530304 SORL1Q92673 2214 aa14.35□□□□□ -0.11
PCF11-203ENST00000530304 I3L3M4 83 aa14.35□□□□□ -0.11
PCF11-203ENST00000530304 LGALS3P17931 250 aaKnown RBP14.35□□□□□ -0.11
PCF11-203ENST00000530304 UBE2D3P61077 147 aa14.35□□□□□ -0.11
PCF11-203ENST00000530304 UBE2D2P62837 147 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms