RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 EML6Q6ZMW3 1958 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 TICRRQ7Z2Z1 1910 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 PATJQ8NI35 1801 aa2.03□□□□□ -2.09
CD44-229ENST00000528672 RGPD2P0DJD1 1756 aa2.03□□□□□ -2.09
CD44-229ENST00000528672 COL18A1P39060 1754 aa2.03□□□□□ -2.09
CD44-229ENST00000528672 RGPD4Q7Z3J3 1758 aa2.03□□□□□ -2.09
CD44-229ENST00000528672 KIDINS220Q9ULH0 1771 aa2.03□□□□□ -2.09
CD44-229ENST00000528672 TEP1Q99973 2627 aaKnown RBP2.03□□□□□ -2.09
CD44-229ENST00000528672 COL5A3P25940 1745 aaPredicted RBP2.03□□□□□ -2.09
CD44-229ENST00000528672 NAV2Q8IVL1 2488 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 COL16A1Q07092 1604 aaPredicted RBP2.02□□□□□ -2.09
CD44-229ENST00000528672 NUP214P35658 2090 aaPredicted RBP2.02□□□□□ -2.09
CD44-229ENST00000528672 ANKRD11Q6UB99 2663 aaPredicted RBP2.02□□□□□ -2.09
CD44-229ENST00000528672 TRAV13-2A0A0B4J235 113 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 A0A1W2PNU3 283 aaPredicted RBP2.02□□□□□ -2.09
CD44-229ENST00000528672 NDUFC1O43677 76 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 PEBP1P30086 187 aaKnown RBP2.02□□□□□ -2.09
CD44-229ENST00000528672 DYNLT1P63172 113 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 ZNF791Q3KP31 576 aaPredicted RBP2.02□□□□□ -2.09
CD44-229ENST00000528672 MIR7-3HGQ8N6C7 128 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 TMEM105Q8N8V8 129 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 SPANXA2-OT1Q8N9U9 137 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 FAM103A1Q9BTL3 118 aaKnown RBP2.02□□□□□ -2.09
CD44-229ENST00000528672 ARL2-SNX15V9GYD0 113 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 ARFGEF2Q9Y6D5 1785 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 PREX1Q8TCU6 1659 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 MAP3K4Q9Y6R4 1608 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 SNRNP200O75643 2136 aaKnown RBP2.02□□□□□ -2.09
CD44-229ENST00000528672 CEP170Q5SW79 1584 aa2.02□□□□□ -2.09
CD44-229ENST00000528672 RGPD3A6NKT7 1758 aaPredicted RBP2.01□□□□□ -2.09
CD44-229ENST00000528672 SIPA1L3O60292 1781 aaPredicted RBP2.01□□□□□ -2.09
CD44-229ENST00000528672 IGKV2D-24A0A075B6R9 120 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 IGHV3-43A0A0B4J1X8 118 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 IGHV1-24A0A0C4DH33 117 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 J3QLW9 94 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 IGHV1-46P01743 117 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 CGB3P0DN86 165 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 CGB7P0DN87 165 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 CCL3P10147 92 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 PIPP12273 146 aaPredicted RBP2.01□□□□□ -2.09
CD44-229ENST00000528672 NPPCP23582 126 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 XCL1P47992 114 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 KRTAP13-3Q3SY46 172 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 S100A7L2Q5SY68 101 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 CYP2G1PQ6ZSU1 146 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 C6orf201Q7Z4U5 140 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 FAM223AQ8IWN6 122 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 LINC00269Q8N2A0 174 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 ZFAND2AQ8N6M9 145 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 PFN4Q8NHR9 129 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 CHCHD1Q96BP2 118 aaKnown RBP2.01□□□□□ -2.09
CD44-229ENST00000528672 TTTY13Q9BZ97 58 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 PLA2G12AQ9BZM1 189 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 GABARAPL1Q9H0R8 117 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 XAGE1AQ9HD64 81 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 FASNP49327 2511 aaKnown RBP2.01□□□□□ -2.09
CD44-229ENST00000528672 SCN8AQ9UQD0 1980 aa2.01□□□□□ -2.09
CD44-229ENST00000528672 NACAE9PAV3 2078 aa2□□□□□ -2.09
CD44-229ENST00000528672 HEATR5AQ86XA9 2040 aa2□□□□□ -2.09
CD44-229ENST00000528672 PIK3C2AO00443 1686 aa2□□□□□ -2.09
CD44-229ENST00000528672 TOPAZ1Q8N9V7 1692 aa2□□□□□ -2.09
CD44-229ENST00000528672 CICQ96RK0 1608 aaPredicted RBP2□□□□□ -2.09
CD44-229ENST00000528672 TRBV7-1A0A0A6YYK4 115 aa2□□□□□ -2.09
CD44-229ENST00000528672 TRAV3A0A0B4J244 114 aa2□□□□□ -2.09
CD44-229ENST00000528672 C19orf71A6NCJ1 209 aa2□□□□□ -2.09
CD44-229ENST00000528672 CRYM-AS1A6NIL9 109 aa2□□□□□ -2.09
CD44-229ENST00000528672 C16orf90A8MZG2 172 aa2□□□□□ -2.09
CD44-229ENST00000528672 B4DSR2 109 aa2□□□□□ -2.09
CD44-229ENST00000528672 LHBP01229 141 aa2□□□□□ -2.09
CD44-229ENST00000528672 NPYP01303 97 aa2□□□□□ -2.09
CD44-229ENST00000528672 IGHV3-30-3P0DP02 117 aa2□□□□□ -2.09
CD44-229ENST00000528672 GCHFRP30047 84 aa2□□□□□ -2.09
CD44-229ENST00000528672 RPL27AP46776 148 aaKnown RBP2□□□□□ -2.09
CD44-229ENST00000528672 FXYD2P54710 66 aa2□□□□□ -2.09
CD44-229ENST00000528672 UBE2D3P61077 147 aa2□□□□□ -2.09
CD44-229ENST00000528672 UBE2D2P62837 147 aa2□□□□□ -2.09
CD44-229ENST00000528672 ESRGQ1W209 222 aa2□□□□□ -2.09
CD44-229ENST00000528672 MRPL51Q4U2R6 128 aaKnown RBP2□□□□□ -2.09
CD44-229ENST00000528672 NCBP2-AS2Q69YL0 99 aa2□□□□□ -2.09
CD44-229ENST00000528672 ADM2Q7Z4H4 148 aa2□□□□□ -2.09
CD44-229ENST00000528672 SMIM4Q8WVI0 70 aa2□□□□□ -2.09
CD44-229ENST00000528672 PPP1R1CQ8WVI7 109 aa2□□□□□ -2.09
CD44-229ENST00000528672 C11orf1Q9H5F2 150 aa2□□□□□ -2.09
CD44-229ENST00000528672 LINC00574Q9H8X3 128 aa2□□□□□ -2.09
CD44-229ENST00000528672 NDUFA12Q9UI09 145 aa2□□□□□ -2.09
CD44-229ENST00000528672 PHLDA3Q9Y5J5 127 aa2□□□□□ -2.09
CD44-229ENST00000528672 TRPM2O94759 1503 aa2□□□□□ -2.09
CD44-229ENST00000528672 ANKRD12Q6UB98 2062 aa2□□□□□ -2.09
CD44-229ENST00000528672 ANAPC1Q9H1A4 1944 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 ASH1LQ9NR48 2969 aaKnown RBP1.99□□□□□ -2.09
CD44-229ENST00000528672 PDCD11Q14690 1871 aaKnown RBP1.99□□□□□ -2.09
CD44-229ENST00000528672 ARHGEF5Q12774 1597 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 BTAF1O14981 1849 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 DSCAML1Q8TD84 2053 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 IGLV4-60A0A075B6I1 120 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 K7ERS5 55 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 IGLV1-51P01701 117 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 SMIM11AP58511 58 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 FXYD7P58549 80 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 KRTAP10-8P60410 259 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms