RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PTPRQQ9UMZ3 2332 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 K7EN84 100 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 OVOL3O00110 214 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 DEFB105AQ8NG35 78 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 PIFOQ8TCI5 191 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 TRBV7-1A0A0A6YYK4 115 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 E9PLD3 99 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 LTAP01374 205 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 ZNF524Q96C55 264 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 C5orf42Q9H799 3197 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 CGB7P0DN87 165 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 TMEM256-PLSCR3K7ERE1 68 aa6.87□□□□□ -1.31
LIMCH1-218ENST00000513024 TEX49A0A1B0GTD5 131 aa6.86□□□□□ -1.31
LIMCH1-218ENST00000513024 B3GALT5-AS1P59052 145 aa6.86□□□□□ -1.31
LIMCH1-218ENST00000513024 NDUFA4L2Q9NRX3 87 aa6.86□□□□□ -1.31
LIMCH1-218ENST00000513024 RBAKDNA6NC62 111 aa6.86□□□□□ -1.31
LIMCH1-218ENST00000513024 FOXL2NBQ6ZUU3 175 aa6.86□□□□□ -1.31
LIMCH1-218ENST00000513024 FAM19A5Q7Z5A7 132 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-218ENST00000513024 NDUFA11Q86Y39 141 aa6.86□□□□□ -1.31
LIMCH1-218ENST00000513024 RPL18AQ02543 176 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-218ENST00000513024 IGHV3-16A0A0C4DH30 117 aa6.86□□□□□ -1.31
LIMCH1-218ENST00000513024 LINC01619G3V211 115 aa6.86□□□□□ -1.31
LIMCH1-218ENST00000513024 RPL35AP18077 110 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-218ENST00000513024 CHD9Q3L8U1 2897 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 NOTCH2Q04721 2471 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 MRPS36P82909 103 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 ZNRF2Q8NHG8 242 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 NACAE9PAV3 2078 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 FAM223BA6NKX1 122 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 USP17L23D6RBM5 183 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 FAM223AQ8IWN6 122 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 TICRRQ7Z2Z1 1910 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 WT1-ASQ06250 92 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 SPINK13Q1W4C9 94 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 IGHV1-69P01742 117 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 DEFB130BP0DP73 79 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 DEFB130AP0DP74 79 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 SHISA2Q6UWI4 295 aa6.85□□□□□ -1.31
LIMCH1-218ENST00000513024 MYO18BQ8IUG5 2567 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 BPY2O14599 106 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 LHBP01229 141 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 TMEM14CQ9P0S9 112 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 KLK9Q9UKQ9 250 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 IGHV3-38A0A0C4DH36 116 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 COL8A2P25067 703 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 UBE2E1P51965 193 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 DEFB131AP59861 70 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 RNASE13Q5GAN3 156 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 DAZ1Q9NQZ3 744 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 SERP1Q9Y6X1 66 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 WDR87Q6ZQQ6 2873 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 FAM208BQ5VWN6 2430 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 EML5Q05BV3 1969 aa6.84□□□□□ -1.31
LIMCH1-218ENST00000513024 PRO0628Q9UI54 55 aa6.84□□□□□ -1.32
LIMCH1-218ENST00000513024 CSDC2Q9Y534 153 aaKnown RBP6.84□□□□□ -1.32
LIMCH1-218ENST00000513024 MED13Q9UHV7 2174 aa6.84□□□□□ -1.32
LIMCH1-218ENST00000513024 TIMM17AQ99595 171 aa6.83□□□□□ -1.32
LIMCH1-218ENST00000513024 PCNX3Q9H6A9 2034 aa6.83□□□□□ -1.32
LIMCH1-218ENST00000513024 ETV2O00321 342 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-218ENST00000513024 FXYD5Q96DB9 178 aa6.83□□□□□ -1.32
LIMCH1-218ENST00000513024 TPSG1Q9NRR2 321 aa6.83□□□□□ -1.32
LIMCH1-218ENST00000513024 XGP55808 180 aa6.83□□□□□ -1.32
LIMCH1-218ENST00000513024 BLCAPP62952 87 aa6.83□□□□□ -1.32
LIMCH1-218ENST00000513024 C2CD3Q4AC94 2353 aa6.83□□□□□ -1.32
LIMCH1-218ENST00000513024 IGKV2D-26A0A0A0MRZ7 120 aa6.83□□□□□ -1.32
LIMCH1-218ENST00000513024 K7EM74 188 aa6.83□□□□□ -1.32
LIMCH1-218ENST00000513024 GATA1P15976 413 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-218ENST00000513024 A0A0J9YXV3 536 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 G3V318 75 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 SAA4P35542 130 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 RSPO1Q2MKA7 263 aaPredicted RBP6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 SERTAD4-AS1Q5TG53 156 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 XCL2Q9UBD3 114 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 CACNA1AO00555 2505 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 ZNF134P52741 427 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 DAZAP2Q15038 168 aaPredicted RBP6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 Q6Q795 121 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 ENHOQ6UWT2 76 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 PRORYQ9H606 182 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 SPTBN5Q9NRC6 3674 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 IGHV4-4A0A075B6R2 117 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 WI2-2373I1.2A0A1W2PRP0 233 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 ATP6V0E1O15342 81 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 TEX36Q5VZQ5 186 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 WDR86Q86TI4 376 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 VCANP13611 3396 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 ETDCA0A1B0GVM5 59 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 PRR20EP86478 221 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 PRR20CP86479 221 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 PRR20DP86480 221 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 PRR20BP86481 221 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 PRR20AP86496 221 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 CFHR3Q02985 330 aa6.82□□□□□ -1.32
LIMCH1-218ENST00000513024 Q6ZR03 302 aa6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 C17orf77Q96MU5 243 aa6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 PLA2G2EQ9NZK7 142 aa6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 SONP18583 2426 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 NCOA6Q14686 2063 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 DAZ2Q13117 558 aaKnown RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms