RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 RNF7Q9UBF6 113 aa9.11□□□□□ -0.95
LIMCH1-213ENST00000511496 A0A087WVE0 104 aa9.11□□□□□ -0.95
LIMCH1-213ENST00000511496 K7EIM0 57 aa9.11□□□□□ -0.95
LIMCH1-213ENST00000511496 CRYGBP07316 175 aa9.11□□□□□ -0.95
LIMCH1-213ENST00000511496 S100A4P26447 101 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-213ENST00000511496 ZZEF1O43149 2961 aa9.11□□□□□ -0.95
LIMCH1-213ENST00000511496 MALRD1Q5VYJ5 2156 aa9.11□□□□□ -0.95
LIMCH1-213ENST00000511496 IGHV3OR16-13A0A075B7E8 117 aa9.11□□□□□ -0.95
LIMCH1-213ENST00000511496 IGHV3-74A0A0B4J1X5 117 aa9.11□□□□□ -0.95
LIMCH1-213ENST00000511496 TEX22C9J3V5 150 aa9.11□□□□□ -0.95
LIMCH1-213ENST00000511496 ZNF415Q09FC8 603 aa9.11□□□□□ -0.95
LIMCH1-213ENST00000511496 DMDP11532 3685 aa9.1□□□□□ -0.95
LIMCH1-213ENST00000511496 CSMD1Q96PZ7 3565 aa9.1□□□□□ -0.95
LIMCH1-213ENST00000511496 IGHV3-66A0A0C4DH42 116 aa9.1□□□□□ -0.95
LIMCH1-213ENST00000511496 A0A0U1RQV1 116 aa9.1□□□□□ -0.95
LIMCH1-213ENST00000511496 WFDC11Q8NEX6 87 aa9.1□□□□□ -0.95
LIMCH1-213ENST00000511496 SMG1Q96Q15 3661 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-213ENST00000511496 LHBP01229 141 aa9.1□□□□□ -0.95
LIMCH1-213ENST00000511496 SYNJ2BPP57105 145 aa9.1□□□□□ -0.95
LIMCH1-213ENST00000511496 TIMM21Q9BVV7 248 aa9.1□□□□□ -0.95
LIMCH1-213ENST00000511496 AGPAT4-IT1Q9H0P7 198 aa9.1□□□□□ -0.95
LIMCH1-213ENST00000511496 RPL18AQ02543 176 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 PKDREJQ9NTG1 2253 aa9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 A0A0J9YXY3 114 aa9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 FAM236DA0A1B0GTK5 79 aa9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 IGKV3-15P01624 115 aa9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 FAM236CP0DP71 79 aa9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 DAZ2Q13117 558 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 CIRBPQ14011 172 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 GFRALQ6UXV0 394 aa9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 DAZ4Q86SG3 579 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 SERP2Q8N6R1 65 aa9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 PSMG3-AS1Q96PY0 264 aa9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 DAZ1Q9NQZ3 744 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 DAZ3Q9NR90 486 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 CXCL5P42830 114 aa9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 CCL8P80075 99 aa9.09□□□□□ -0.95
LIMCH1-213ENST00000511496 M0R1W7 72 aa9.08□□□□□ -0.96
LIMCH1-213ENST00000511496 LEPROTO15243 131 aa9.08□□□□□ -0.96
LIMCH1-213ENST00000511496 TMEM200BQ69YZ2 307 aa9.08□□□□□ -0.96
LIMCH1-213ENST00000511496 SMAD5-AS1Q9Y6J3 95 aa9.08□□□□□ -0.96
LIMCH1-213ENST00000511496 IGIPA6NJ69 53 aa9.08□□□□□ -0.96
LIMCH1-213ENST00000511496 TACC2O95359 2948 aa9.08□□□□□ -0.96
LIMCH1-213ENST00000511496 LOXP28300 417 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-213ENST00000511496 DCANP1Q8TF63 244 aa9.08□□□□□ -0.96
LIMCH1-213ENST00000511496 ADAMTSL4-AS1Q5T5F5 129 aa9.07□□□□□ -0.96
LIMCH1-213ENST00000511496 PHLDA3Q9Y5J5 127 aa9.07□□□□□ -0.96
LIMCH1-213ENST00000511496 IGHV1-18A0A0C4DH31 117 aa9.07□□□□□ -0.96
LIMCH1-213ENST00000511496 ABCA4P78363 2273 aa9.07□□□□□ -0.96
LIMCH1-213ENST00000511496 TIRAPP58753 221 aa9.06□□□□□ -0.96
LIMCH1-213ENST00000511496 LINC00311Q8N616 119 aa9.06□□□□□ -0.96
LIMCH1-213ENST00000511496 DAND5Q8N907 189 aa9.06□□□□□ -0.96
LIMCH1-213ENST00000511496 V9GYY9 64 aa9.06□□□□□ -0.96
LIMCH1-213ENST00000511496 NDPQ00604 133 aa9.06□□□□□ -0.96
LIMCH1-213ENST00000511496 LINC00574Q9H8X3 128 aa9.06□□□□□ -0.96
LIMCH1-213ENST00000511496 FAM27E3Q08E93 113 aa9.06□□□□□ -0.96
LIMCH1-213ENST00000511496 ZNF876PQ49A33 203 aa9.06□□□□□ -0.96
LIMCH1-213ENST00000511496 IGHV3-49A0A0A0MS15 119 aa9.05□□□□□ -0.96
LIMCH1-213ENST00000511496 FAM223AQ8IWN6 122 aa9.05□□□□□ -0.96
LIMCH1-213ENST00000511496 ASPMQ8IZT6 3477 aa9.05□□□□□ -0.96
LIMCH1-213ENST00000511496 A0A0J9YXV3 536 aa9.05□□□□□ -0.96
LIMCH1-213ENST00000511496 RNF223E7ERA6 249 aa9.05□□□□□ -0.96
LIMCH1-213ENST00000511496 F5H697 171 aa9.05□□□□□ -0.96
LIMCH1-213ENST00000511496 NXPH4O95158 308 aa9.05□□□□□ -0.96
LIMCH1-213ENST00000511496 CACNA1EQ15878 2313 aa9.05□□□□□ -0.96
LIMCH1-213ENST00000511496 UPK3BQ9BT76 320 aa9.05□□□□□ -0.96
LIMCH1-213ENST00000511496 BAALC-AS2P0C853 105 aa9.05□□□□□ -0.96
LIMCH1-213ENST00000511496 FHL2Q14192 279 aa9.05□□□□□ -0.96
LIMCH1-213ENST00000511496 TNRC18O15417 2968 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-213ENST00000511496 PCNX1Q96RV3 2341 aa9.04□□□□□ -0.96
LIMCH1-213ENST00000511496 M0R1B8 84 aa9.04□□□□□ -0.96
LIMCH1-213ENST00000511496 TMEM30BQ3MIR4 351 aa9.04□□□□□ -0.96
LIMCH1-213ENST00000511496 SPRR3Q9UBC9 169 aa9.04□□□□□ -0.96
LIMCH1-213ENST00000511496 TMEM86BQ8N661 226 aa9.04□□□□□ -0.96
LIMCH1-213ENST00000511496 DYNLRB1Q9NP97 96 aa9.04□□□□□ -0.96
LIMCH1-213ENST00000511496 DMXL2Q8TDJ6 3036 aa9.04□□□□□ -0.96
LIMCH1-213ENST00000511496 HIST1H4AP62805 103 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-213ENST00000511496 CD59P13987 128 aa9.03□□□□□ -0.96
LIMCH1-213ENST00000511496 TMEM141Q96I45 108 aa9.03□□□□□ -0.96
LIMCH1-213ENST00000511496 RAI1Q7Z5J4 1906 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-213ENST00000511496 IGHV1-69DA0A0B4J2H0 117 aa9.03□□□□□ -0.96
LIMCH1-213ENST00000511496 A0A0U1RRA0 63 aa9.03□□□□□ -0.96
LIMCH1-213ENST00000511496 USP17L23D6RBM5 183 aa9.03□□□□□ -0.96
LIMCH1-213ENST00000511496 PTPRQQ9UMZ3 2332 aa9.03□□□□□ -0.96
LIMCH1-213ENST00000511496 A8MZ25 164 aa9.02□□□□□ -0.96
LIMCH1-213ENST00000511496 IGF1P05019 195 aa9.02□□□□□ -0.96
LIMCH1-213ENST00000511496 IGHV3-30-3P0DP02 117 aa9.02□□□□□ -0.97
LIMCH1-213ENST00000511496 GPHB5Q86YW7 130 aa9.02□□□□□ -0.97
LIMCH1-213ENST00000511496 TMEM243Q9BU79 118 aa9.02□□□□□ -0.97
LIMCH1-213ENST00000511496 IGHV4-4A0A075B6R2 117 aa9.01□□□□□ -0.97
LIMCH1-213ENST00000511496 TMEM61Q8N0U2 210 aa9.01□□□□□ -0.97
LIMCH1-213ENST00000511496 BRK1Q8WUW1 75 aa9.01□□□□□ -0.97
LIMCH1-213ENST00000511496 LY6G6EA0A0G2JKS1 128 aa9.01□□□□□ -0.97
LIMCH1-213ENST00000511496 C9orf85Q96MD7 179 aa9.01□□□□□ -0.97
LIMCH1-213ENST00000511496 U3KQA8 63 aa9.01□□□□□ -0.97
LIMCH1-213ENST00000511496 SDHAF1A6NFY7 115 aa9.01□□□□□ -0.97
LIMCH1-213ENST00000511496 K7ENP7 123 aa9.01□□□□□ -0.97
LIMCH1-213ENST00000511496 PRR9Q5T870 116 aa9□□□□□ -0.97
LIMCH1-213ENST00000511496 C1orf195Q5TG92 126 aa9□□□□□ -0.97
LIMCH1-213ENST00000511496 TIMM17AQ99595 171 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms