RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 H2AFB1P0C5Y9 115 aa12.01□□□□□ -0.49
TPM3-220ENST00000509601 IGHV3-30-3P0DP02 117 aa12.01□□□□□ -0.49
TPM3-220ENST00000509601 IGHV3-30-5P0DP03 117 aa12.01□□□□□ -0.49
TPM3-220ENST00000509601 CDPF1Q6NVV7 123 aa12.01□□□□□ -0.49
TPM3-220ENST00000509601 SYT8Q8NBV8 401 aa12.01□□□□□ -0.49
TPM3-220ENST00000509601 BOLA1Q9Y3E2 137 aa12.01□□□□□ -0.49
TPM3-220ENST00000509601 S100A9P06702 114 aaKnown RBP12□□□□□ -0.49
TPM3-220ENST00000509601 KRTAP10-1P60331 282 aa12□□□□□ -0.49
TPM3-220ENST00000509601 CCL20P78556 96 aa12□□□□□ -0.49
TPM3-220ENST00000509601 Q8N3U1 123 aa12□□□□□ -0.49
TPM3-220ENST00000509601 PHLDA3Q9Y5J5 127 aa12□□□□□ -0.49
TPM3-220ENST00000509601 A0A087WWL8 130 aa11.99□□□□□ -0.49
TPM3-220ENST00000509601 TPT1P13693 172 aaKnown RBP11.99□□□□□ -0.49
TPM3-220ENST00000509601 XGP55808 180 aa11.99□□□□□ -0.49
TPM3-220ENST00000509601 EIF5AP63241 154 aaKnown RBP11.99□□□□□ -0.49
TPM3-220ENST00000509601 BAGE2Q86Y30 109 aa11.99□□□□□ -0.49
TPM3-220ENST00000509601 RHODO00212 210 aa11.98□□□□□ -0.49
TPM3-220ENST00000509601 RPL19P84098 196 aaKnown RBP11.98□□□□□ -0.49
TPM3-220ENST00000509601 VPS13BQ7Z7G8 4022 aa11.98□□□□□ -0.49
TPM3-220ENST00000509601 M0R381 172 aa11.97□□□□□ -0.49
TPM3-220ENST00000509601 FAM74A4Q5TZK3 123 aa11.97□□□□□ -0.49
TPM3-220ENST00000509601 Q9HAA7 133 aa11.97□□□□□ -0.49
TPM3-220ENST00000509601 PFDN1O60925 122 aa11.96□□□□□ -0.49
TPM3-220ENST00000509601 ZFP82Q8N141 532 aa11.96□□□□□ -0.49
TPM3-220ENST00000509601 SSBP4Q9BWG4 385 aaPredicted RBP11.96□□□□□ -0.49
TPM3-220ENST00000509601 TRAV1-1A0A0B4J248 108 aa11.95□□□□□ -0.5
TPM3-220ENST00000509601 PSCAO43653 123 aa11.95□□□□□ -0.5
TPM3-220ENST00000509601 A0A087WWC5 75 aa11.94□□□□□ -0.5
TPM3-220ENST00000509601 CXCL1P09341 107 aa11.94□□□□□ -0.5
TPM3-220ENST00000509601 LAGE3Q14657 143 aa11.94□□□□□ -0.5
TPM3-220ENST00000509601 DAZ4Q86SG3 579 aaKnown RBP11.94□□□□□ -0.5
TPM3-220ENST00000509601 OR10AG1Q8NH19 301 aa11.94□□□□□ -0.5
TPM3-220ENST00000509601 DAZ3Q9NR90 486 aaKnown RBP11.94□□□□□ -0.5
TPM3-220ENST00000509601 SNAI2O43623 268 aa11.93□□□□□ -0.5
TPM3-220ENST00000509601 GCSHP23434 173 aa11.93□□□□□ -0.5
TPM3-220ENST00000509601 RPL35P42766 123 aaKnown RBP11.93□□□□□ -0.5
TPM3-220ENST00000509601 DERL1Q9BUN8 251 aa11.93□□□□□ -0.5
TPM3-220ENST00000509601 TRBV10-1A0A0K0K1A3 114 aa11.92□□□□□ -0.5
TPM3-220ENST00000509601 RAB5CP51148 216 aa11.92□□□□□ -0.5
TPM3-220ENST00000509601 TCTE3Q8IZS6 198 aa11.92□□□□□ -0.5
TPM3-220ENST00000509601 C11orf52Q96A22 123 aa11.92□□□□□ -0.5
TPM3-220ENST00000509601 GNG13Q9P2W3 67 aa11.92□□□□□ -0.5
TPM3-220ENST00000509601 MUC21A0A0G2JKD1 596 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 MUC21A0A140T8X8 626 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 IGLV2-8P01709 118 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 SULT1A2P50226 295 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 UBE2D3P61077 147 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 UBE2D2P62837 147 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 WFDC2Q14508 124 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 PRR27Q6MZM9 219 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 NIT1Q86X76 327 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 Q8N814 137 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 OR10G8Q8NGN5 311 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 MANBALQ9NQG1 85 aa11.91□□□□□ -0.5
TPM3-220ENST00000509601 OR5AL1P0C617 328 aa11.9□□□□□ -0.5
TPM3-220ENST00000509601 RAB4BP61018 213 aa11.9□□□□□ -0.5
TPM3-220ENST00000509601 NTN5Q8WTR8 489 aaPredicted RBP11.9□□□□□ -0.5
TPM3-220ENST00000509601 TM2D2Q9BX73 214 aa11.9□□□□□ -0.5
TPM3-220ENST00000509601 TRBV7-3A0A075B6L6 115 aa11.89□□□□□ -0.51
TPM3-220ENST00000509601 IGLV5-52A0A0A0MRZ9 124 aa11.89□□□□□ -0.51
TPM3-220ENST00000509601 TRAV8-3A0A0A6YYJ7 113 aa11.89□□□□□ -0.51
TPM3-220ENST00000509601 RAB19A4D1S5 217 aa11.89□□□□□ -0.51
TPM3-220ENST00000509601 RPL36AP83881 106 aaKnown RBP11.89□□□□□ -0.51
TPM3-220ENST00000509601 RPL36ALQ969Q0 106 aaKnown RBP11.89□□□□□ -0.51
TPM3-220ENST00000509601 DNAJC30Q96LL9 226 aa11.89□□□□□ -0.51
TPM3-220ENST00000509601 KIF25-AS1Q9Y6Z4 181 aa11.89□□□□□ -0.51
TPM3-220ENST00000509601 EIF5AL1Q6IS14 154 aaKnown RBP11.88□□□□□ -0.51
TPM3-220ENST00000509601 Q6ZNX1 250 aa11.88□□□□□ -0.51
TPM3-220ENST00000509601 NEXN-AS1Q8NBZ9 246 aa11.88□□□□□ -0.51
TPM3-220ENST00000509601 SSTP61278 116 aa11.87□□□□□ -0.51
TPM3-220ENST00000509601 TOR2AQ5JU69 321 aa11.87□□□□□ -0.51
TPM3-220ENST00000509601 SPANXN1Q5VSR9 72 aa11.87□□□□□ -0.51
TPM3-220ENST00000509601 C19orf71A6NCJ1 209 aa11.86□□□□□ -0.51
TPM3-220ENST00000509601 EPM2AB3EWF7 344 aa11.86□□□□□ -0.51
TPM3-220ENST00000509601 C1QBP02746 253 aa11.86□□□□□ -0.51
TPM3-220ENST00000509601 GZMBP10144 247 aa11.86□□□□□ -0.51
TPM3-220ENST00000509601 CENPWQ5EE01 88 aa11.86□□□□□ -0.51
TPM3-220ENST00000509601 SLC51BQ86UW2 128 aa11.86□□□□□ -0.51
TPM3-220ENST00000509601 TEX46H3BTG2 121 aa11.85□□□□□ -0.51
TPM3-220ENST00000509601 IGLC6P0CF74 106 aa11.85□□□□□ -0.51
TPM3-220ENST00000509601 KLK12Q9UKR0 248 aa11.85□□□□□ -0.51
TPM3-220ENST00000509601 HERC1Q15751 4861 aa11.85□□□□□ -0.51
TPM3-220ENST00000509601 TRBV6-8A0A0A6YYG3 113 aa11.84□□□□□ -0.51
TPM3-220ENST00000509601 RBFOX3A6NFN3 312 aa11.84□□□□□ -0.51
TPM3-220ENST00000509601 MEF2BQ02080 365 aaPredicted RBP11.84□□□□□ -0.51
TPM3-220ENST00000509601 ZNF56Q15929 161 aa11.84□□□□□ -0.51
TPM3-220ENST00000509601 BAALCQ8WXS3 180 aa11.84□□□□□ -0.51
TPM3-220ENST00000509601 CHCHD7Q9BUK0 85 aa11.84□□□□□ -0.51
TPM3-220ENST00000509601 FAM30AQ9NZY2 134 aa11.84□□□□□ -0.51
TPM3-220ENST00000509601 URGCP-MRPS24S4R325 110 aa11.84□□□□□ -0.51
TPM3-220ENST00000509601 TRBV20OR9-2A0A075B6H5 130 aa11.83□□□□□ -0.52
TPM3-220ENST00000509601 F5H697 171 aa11.83□□□□□ -0.52
TPM3-220ENST00000509601 LECT2O14960 151 aa11.83□□□□□ -0.52
TPM3-220ENST00000509601 SMR3BP02814 79 aaPredicted RBP11.83□□□□□ -0.52
TPM3-220ENST00000509601 OR2D3Q8NGH3 330 aa11.83□□□□□ -0.52
TPM3-220ENST00000509601 MED9Q9NWA0 146 aa11.83□□□□□ -0.52
TPM3-220ENST00000509601 COX11Q9Y6N1 276 aa11.83□□□□□ -0.52
TPM3-220ENST00000509601 A0A087WX48 190 aa11.82□□□□□ -0.52
TPM3-220ENST00000509601 PDE6DO43924 150 aa11.82□□□□□ -0.52
TPM3-220ENST00000509601 BCL2P10415 239 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms