RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 NDUFA11Q86Y39 141 aa6.87□□□□□ -1.31
PDGFRA-208ENST00000509490 SYT8Q8NBV8 401 aa6.87□□□□□ -1.31
PDGFRA-208ENST00000509490 PLEKHB2Q96CS7 222 aa6.87□□□□□ -1.31
PDGFRA-208ENST00000509490 C1QTNF4Q9BXJ3 329 aa6.87□□□□□ -1.31
PDGFRA-208ENST00000509490 ABCA4P78363 2273 aa6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 PGPEP1Q9NXJ5 209 aa6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 LAMA5O15230 3695 aa6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 AGRNO00468 2067 aa6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 SDHAF1A6NFY7 115 aa6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 F6UB75 175 aa6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 C19orf84I3L1E1 186 aa6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 K7EQG2 157 aa6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 IGHV4-38-2P0DP08 117 aa6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 SMCPP49901 116 aaPredicted RBP6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 TRPT1Q86TN4 253 aaKnown RBP6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 PYGO1Q9Y3Y4 419 aa6.86□□□□□ -1.31
PDGFRA-208ENST00000509490 ABCA2Q9BZC7 2435 aa6.85□□□□□ -1.31
PDGFRA-208ENST00000509490 H3BUX3 64 aa6.85□□□□□ -1.31
PDGFRA-208ENST00000509490 LEPROTO15243 131 aa6.85□□□□□ -1.31
PDGFRA-208ENST00000509490 TMEM223A0PJW6 202 aa6.85□□□□□ -1.31
PDGFRA-208ENST00000509490 ZNRF2Q8NHG8 242 aa6.85□□□□□ -1.31
PDGFRA-208ENST00000509490 LINC00527Q9UJ94 153 aa6.85□□□□□ -1.31
PDGFRA-208ENST00000509490 TSSC4Q9Y5U2 329 aaPredicted RBP6.85□□□□□ -1.31
PDGFRA-208ENST00000509490 MSMBP08118 114 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 AZU1P20160 251 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 FOXI1Q12951 378 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 TCTEX1D4Q5JR98 221 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 TRAV2A0A0B4J234 112 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 A0A0B4J2C4 111 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 DSCR9P59020 149 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 DEFB1P60022 68 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 ETDBQ3ZM63 59 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 BRD3OSQ6XYD6 125 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 C10orf126Q8N4M7 172 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 C20orf203Q8NBC4 194 aa6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 MRPL16Q9NX20 251 aaKnown RBP6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 ZFHX2Q9C0A1 2572 aaPredicted RBP6.84□□□□□ -1.31
PDGFRA-208ENST00000509490 TSPEAR-AS2P59090 65 aa6.84□□□□□ -1.32
PDGFRA-208ENST00000509490 SCGB1D4Q6XE38 83 aa6.84□□□□□ -1.32
PDGFRA-208ENST00000509490 RNF183Q96D59 192 aa6.84□□□□□ -1.32
PDGFRA-208ENST00000509490 LINC00467Q9BRT7 94 aa6.84□□□□□ -1.32
PDGFRA-208ENST00000509490 RIF1Q5UIP0 2472 aaKnown RBP6.84□□□□□ -1.32
PDGFRA-208ENST00000509490 PTPRZ1P23471 2315 aaPredicted RBP6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 MUC6Q6W4X9 2439 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 IGHV1OR15-1A0A075B7D0 117 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 J3QQQ9 107 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 CFC1BP0CG36 223 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 CFC1P0CG37 223 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 P0DMU3 169 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 FAM231AP0DMU4 169 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 FAM231CP0DMU5 169 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 BLCAPP62952 87 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 SCGB2A2Q13296 93 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 AMTNQ6UX39 209 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 C1orf43Q9BWL3 253 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 CACNA1BQ00975 2339 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 IGHV3-11P01762 117 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 SH2D6Q7Z4S9 175 aa6.83□□□□□ -1.32
PDGFRA-208ENST00000509490 TPRP12270 2363 aaKnown RBP6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 TRGV11A0A075B6L2 103 aa6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 SRSF9Q13242 221 aaKnown RBP eCLIP6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 I3L3M4 83 aa6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 J3QLI3 93 aa6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 SPRY2O43597 315 aa6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 APOMO95445 188 aa6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 SNRPD3P62318 126 aaKnown RBP6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 Q6ZS46 218 aa6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 TEN1Q86WV5 123 aa6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 KLHL30-AS1Q8NEE0 82 aa6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 PPDPFLQ8WWR9 84 aa6.82□□□□□ -1.32
PDGFRA-208ENST00000509490 TACC2O95359 2948 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 B4DSR2 109 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 RPL39P62891 51 aaKnown RBP6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 JPT2Q9H910 190 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 PRO1854Q9UHT4 67 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 WNK2Q9Y3S1 2297 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 IGHV3OR16-10A0A075B7F0 116 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 M0R2P5 195 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 ZNF22P17026 224 aaPredicted RBP6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 RPL11P62913 178 aaKnown RBP6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 LY6EQ16553 131 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 CCL19Q99731 98 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 CDIP1Q9H305 208 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 SELENOKQ9Y6D0 94 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 LRBAP50851 2863 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 TRAV12-3A0A0B4J271 114 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 RHODO00212 210 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 ELANEP08246 267 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 MRPS36P82909 103 aaKnown RBP6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 Q8N1Y9 231 aa6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 TMEM263Q8WUH6 116 aaKnown RBP6.81□□□□□ -1.32
PDGFRA-208ENST00000509490 IGLV4-3A0A075B6K6 122 aa6.8□□□□□ -1.32
PDGFRA-208ENST00000509490 FSHBP01225 129 aa6.8□□□□□ -1.32
PDGFRA-208ENST00000509490 FAM104AQ969W3 186 aa6.8□□□□□ -1.32
PDGFRA-208ENST00000509490 IGHV4-30-2A0A087WSY4 118 aa6.8□□□□□ -1.32
PDGFRA-208ENST00000509490 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.8□□□□□ -1.32
PDGFRA-208ENST00000509490 LGALS3P17931 250 aaKnown RBP6.8□□□□□ -1.32
PDGFRA-208ENST00000509490 A0A087WWL8 130 aa6.79□□□□□ -1.32
PDGFRA-208ENST00000509490 A0A096LNT2 108 aa6.79□□□□□ -1.32
PDGFRA-208ENST00000509490 TCL1BO95988 128 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms