RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 A0A087WWL8 130 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 AMMECR1LQ6DCA0 310 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 C9orf85Q96MD7 179 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 ABCA12Q86UK0 2595 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 RHOHQ15669 191 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 PRR9Q5T870 116 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 I3L3M4 83 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 IFI27P40305 119 aaPredicted RBP6.19□□□□□ -1.42
USP54-215ENST00000497106 ZFP2Q6ZN57 461 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 TEX43Q6ZNM6 134 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 STPG4Q8N801 248 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 TMEM101Q96IK0 257 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 U3KQK5 164 aa6.19□□□□□ -1.42
USP54-215ENST00000497106 NPYP01303 97 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 DEFB125Q8N687 156 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 EMP1P54849 157 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 FRYQ5TBA9 3013 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 POLQO75417 2590 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 TRAV26-1A0A087WT03 109 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 SMKR1H3BMG3 65 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 ADAMTSL5Q6ZMM2 481 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 FAM19A2Q8N3H0 131 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 IFI27L1Q96BM0 104 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 PMCHL2Q9BQD1 86 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 IGLL1P15814 213 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 AMTNQ6UX39 209 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 TMEM141Q96I45 108 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 SCRT2Q9NQ03 307 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 DMDP11532 3685 aa6.18□□□□□ -1.42
USP54-215ENST00000497106 TRAV4A0A0B4J268 109 aa6.17□□□□□ -1.42
USP54-215ENST00000497106 A8MTW9 85 aa6.17□□□□□ -1.42
USP54-215ENST00000497106 DAD1P61803 113 aa6.17□□□□□ -1.42
USP54-215ENST00000497106 SIGMAR1Q99720 223 aa6.17□□□□□ -1.42
USP54-215ENST00000497106 C11orf21Q9P2W6 132 aa6.17□□□□□ -1.42
USP54-215ENST00000497106 NXPH4O95158 308 aa6.17□□□□□ -1.42
USP54-215ENST00000497106 RPL32P62910 135 aaKnown RBP6.17□□□□□ -1.42
USP54-215ENST00000497106 PAM16Q9Y3D7 125 aa6.17□□□□□ -1.42
USP54-215ENST00000497106 SDHAF1A6NFY7 115 aa6.17□□□□□ -1.42
USP54-215ENST00000497106 LYRM9A8MSI8 78 aa6.17□□□□□ -1.42
USP54-215ENST00000497106 G3V4G9 280 aa6.17□□□□□ -1.42
USP54-215ENST00000497106 MRPL16Q9NX20 251 aaKnown RBP6.17□□□□□ -1.42
USP54-215ENST00000497106 SUMO4Q6EEV6 95 aa6.17□□□□□ -1.42
USP54-215ENST00000497106 TRBV10-1A0A0K0K1A3 114 aa6.16□□□□□ -1.42
USP54-215ENST00000497106 RNASE3P12724 160 aaKnown RBP6.16□□□□□ -1.42
USP54-215ENST00000497106 GCSHP23434 173 aa6.16□□□□□ -1.42
USP54-215ENST00000497106 MSRB1Q9NZV6 116 aa6.16□□□□□ -1.42
USP54-215ENST00000497106 MDFICQ9P1T7 246 aa6.16□□□□□ -1.42
USP54-215ENST00000497106 FASNP49327 2511 aaKnown RBP6.16□□□□□ -1.42
USP54-215ENST00000497106 SH2D6Q7Z4S9 175 aa6.16□□□□□ -1.42
USP54-215ENST00000497106 NOP10Q9NPE3 64 aaKnown RBP6.16□□□□□ -1.42
USP54-215ENST00000497106 MRPS16Q9Y3D3 137 aaKnown RBP6.16□□□□□ -1.42
USP54-215ENST00000497106 FREM2Q5SZK8 3169 aa6.16□□□□□ -1.42
USP54-215ENST00000497106 MIFP14174 115 aa6.16□□□□□ -1.42
USP54-215ENST00000497106 GAGE12BA1L429 117 aa6.15□□□□□ -1.42
USP54-215ENST00000497106 GAGE7O76087 117 aa6.15□□□□□ -1.42
USP54-215ENST00000497106 GAGE12FP0CL80 117 aa6.15□□□□□ -1.42
USP54-215ENST00000497106 GAGE12GP0CL81 117 aa6.15□□□□□ -1.42
USP54-215ENST00000497106 GAGE12IP0CL82 117 aa6.15□□□□□ -1.42
USP54-215ENST00000497106 SPART-AS1P0CW21 52 aa6.15□□□□□ -1.42
USP54-215ENST00000497106 WFDC9Q8NEX5 89 aa6.15□□□□□ -1.42
USP54-215ENST00000497106 KRTAP24-1Q3LI83 254 aa6.15□□□□□ -1.42
USP54-215ENST00000497106 IGHV1-24A0A0C4DH33 117 aa6.15□□□□□ -1.43
USP54-215ENST00000497106 ADARB2-AS1A8MUL3 147 aa6.15□□□□□ -1.43
USP54-215ENST00000497106 RS1O15537 224 aa6.15□□□□□ -1.43
USP54-215ENST00000497106 DAZ2Q13117 558 aaKnown RBP6.15□□□□□ -1.43
USP54-215ENST00000497106 SYS1-DBNDD2H3BUS1 97 aa6.15□□□□□ -1.43
USP54-215ENST00000497106 K7EQD1 137 aa6.15□□□□□ -1.43
USP54-215ENST00000497106 PGPEP1Q9NXJ5 209 aa6.15□□□□□ -1.43
USP54-215ENST00000497106 UBR5O95071 2799 aaPredicted RBP6.15□□□□□ -1.43
USP54-215ENST00000497106 HINT1P49773 126 aaPredicted RBP6.14□□□□□ -1.43
USP54-215ENST00000497106 SPATA45Q537H7 98 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 IGHV3-73A0A0B4J1V6 119 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 TRAV26-2A0A0B4J265 109 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 SPRY2O43597 315 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 DPM2O94777 84 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 ZMAT4Q9H898 229 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 TRBV6-5A0A0K0K1A5 114 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 C3orf79P0CE67 100 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 SEC11AP67812 179 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 DAZ4Q86SG3 579 aaKnown RBP6.14□□□□□ -1.43
USP54-215ENST00000497106 OR11H2Q8NH07 326 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 VCX2Q9H322 139 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 DAZ3Q9NR90 486 aaKnown RBP6.14□□□□□ -1.43
USP54-215ENST00000497106 TP53TG3Q9ULZ0 132 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 DEFB130BP0DP73 79 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 DEFB130AP0DP74 79 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 PLNP26678 52 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 RNF185Q96GF1 192 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 C18orf15Q96N68 181 aa6.14□□□□□ -1.43
USP54-215ENST00000497106 SONP18583 2426 aaKnown RBP6.14□□□□□ -1.43
USP54-215ENST00000497106 HERV-K104P63124 156 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 C2orf66Q6UXQ4 117 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 GTF2H5Q6ZYL4 71 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 ITPR1Q14643 2758 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 TRAV9-2A0A087WT02 112 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 H3BRM9 83 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 IGHV3-53P01767 116 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 KIR3DS1Q14943 382 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 HIST2H2BDQ6DRA6 164 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 SPEGQ15772 3267 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms