RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 IGF1P05019 195 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 UBE2L3P68036 154 aaKnown RBP3.73□□□□□ -1.81
CSMD3-208ENST00000497026 RIGQ13278 110 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 WFDC2Q14508 124 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 POU2AF1Q16633 256 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 RBPMS2Q6ZRY4 209 aaKnown RBP3.73□□□□□ -1.81
CSMD3-208ENST00000497026 LINC00173Q6ZV60 143 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 PDPNQ86YL7 162 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 CEND1Q8N111 149 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 OR8A1Q8NGG7 326 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 ZNF414Q96IQ9 312 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 HSD17B10Q99714 261 aaKnown RBP3.73□□□□□ -1.81
CSMD3-208ENST00000497026 RASL11BQ9BPW5 248 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 FBXL15Q9H469 300 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 ZNF355PQ9NSJ1 428 aa3.73□□□□□ -1.81
CSMD3-208ENST00000497026 TIMM8BQ9Y5J9 83 aaPredicted RBP3.73□□□□□ -1.81
CSMD3-208ENST00000497026 PRKDCP78527 4128 aaKnown RBP3.73□□□□□ -1.81
CSMD3-208ENST00000497026 IGLV5-52A0A0A0MRZ9 124 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 TRAV5A0A0B4J249 113 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 TCRBV4S1A1TA0A5B7 111 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 GGTLC3B5MD39 225 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 IGLL5B9A064 214 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 SNAI2O43623 268 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 IGLV2-8P01709 118 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 P01737 135 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 HBDP02042 147 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 APOHP02749 345 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-208ENST00000497026 MT-ATP8P03928 68 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 CRYGBP07316 175 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 PSMB8P28062 276 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 DUTP33316 252 aaKnown RBP3.72□□□□□ -1.81
CSMD3-208ENST00000497026 KIR2DS2P43631 304 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 CRIP2P52943 208 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-208ENST00000497026 FOXA3P55318 350 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-208ENST00000497026 CACNG7P62955 275 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 ATP5G2Q06055 141 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 EIF4EBP1Q13541 118 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-208ENST00000497026 RRN3P1Q2M238 152 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 MRGPRG-AS1Q2M3A8 158 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 TTC32Q5I0X7 151 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 KPRPQ5T749 579 aaPredicted RBP3.72□□□□□ -1.81
CSMD3-208ENST00000497026 GDF5OSQ5U4N7 250 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 SPATA31B1PQ5VZV4 182 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 Q6AWC8 147 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 Q6Q795 121 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 WFDC9Q8NEX5 89 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 MYOZ3Q8TDC0 251 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 SLC25A2Q9BXI2 301 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 F11RQ9Y624 299 aaKnown RBP3.72□□□□□ -1.81
CSMD3-208ENST00000497026 TNCP24821 2201 aa3.72□□□□□ -1.81
CSMD3-208ENST00000497026 IGHV4-28A0A0C4DH34 117 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 SRRM4A7MD48 611 aaKnown RBP3.71□□□□□ -1.82
CSMD3-208ENST00000497026 LINC01619G3V211 115 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 IL4P05112 153 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 SLC25A5P05141 298 aaKnown RBP3.71□□□□□ -1.82
CSMD3-208ENST00000497026 ZNF688P0C7X2 276 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 C8orf88P0DMB2 117 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 IFITM1P13164 125 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 ASIPP42127 132 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 FXYD2P54710 66 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 XGP55808 180 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 NDUFV3P56181 108 aaKnown RBP3.71□□□□□ -1.82
CSMD3-208ENST00000497026 BRWD1-AS2P59051 145 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 GAGE2BQ13066 116 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 DEFB136Q30KP8 78 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 GAGE2EQ4V326 116 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 MIR17HGQ75NE6 70 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 SH2D6Q7Z4S9 175 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 GATD1Q8NB37 220 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 KLHL30-AS1Q8NEE0 82 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 OR1L4Q8NGR5 311 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 PTH2Q96A98 100 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 FLYWCH2Q96CP2 140 aaKnown RBP3.71□□□□□ -1.82
CSMD3-208ENST00000497026 FMC1Q96HJ9 113 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 PRELID3AQ96N28 172 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 DUX3Q96PT4 197 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 RNF5Q99942 180 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 C20orf78Q9BR46 151 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 SPANXDQ9BXN6 97 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 GAGE2DQ9UEU5 116 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 KLF12Q9Y4X4 402 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 LSM4Q9Y4Z0 139 aaKnown RBP3.71□□□□□ -1.82
CSMD3-208ENST00000497026 NBEAL1Q6ZS30 2694 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 NOTCH3Q9UM47 2321 aa3.71□□□□□ -1.82
CSMD3-208ENST00000497026 TRAV41A0A0B4J266 112 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 SCGB2A1O75556 95 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 BRI3O95415 125 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 PRB2P02812 416 aaPredicted RBP3.7□□□□□ -1.82
CSMD3-208ENST00000497026 SAA1P0DJI8 122 aaPredicted RBP3.7□□□□□ -1.82
CSMD3-208ENST00000497026 ID1P41134 155 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 ECSCRQ19T08 205 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 PPP1R27Q86WC6 154 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 TEN1Q86WV5 123 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 ZNF491Q8N8L2 437 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 OR13C6PQ8NH95 151 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 PHLDA1Q8WV24 401 aaPredicted RBP3.7□□□□□ -1.82
CSMD3-208ENST00000497026 IFI27L1Q96BM0 104 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 TPPP3Q9BW30 176 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 PRO0461Q9UI25 63 aa3.7□□□□□ -1.82
CSMD3-208ENST00000497026 SELENOKQ9Y6D0 94 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms