RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SIRPDQ9H106 197 aa10.18□□□□□ -0.78
PTPRF-215ENST00000496447 DEFB135Q30KP9 77 aa10.17□□□□□ -0.78
PTPRF-215ENST00000496447 C5orf38Q86SI9 138 aa10.17□□□□□ -0.78
PTPRF-215ENST00000496447 MED13Q9UHV7 2174 aa10.17□□□□□ -0.78
PTPRF-215ENST00000496447 TMEM89A2RUT3 159 aa10.17□□□□□ -0.78
PTPRF-215ENST00000496447 RNF183Q96D59 192 aa10.17□□□□□ -0.78
PTPRF-215ENST00000496447 CAMK2N2Q96S95 79 aa10.17□□□□□ -0.78
PTPRF-215ENST00000496447 DNAJC9-AS1A6NH13 148 aa10.17□□□□□ -0.78
PTPRF-215ENST00000496447 WISP2O76076 250 aa10.17□□□□□ -0.78
PTPRF-215ENST00000496447 SLC25A29Q8N8R3 303 aa10.17□□□□□ -0.78
PTPRF-215ENST00000496447 IGLV10-54A0A075B6I4 117 aa10.17□□□□□ -0.78
PTPRF-215ENST00000496447 IGHG2P01859 326 aa10.17□□□□□ -0.78
PTPRF-215ENST00000496447 KLK5Q9Y337 293 aaPredicted RBP10.17□□□□□ -0.78
PTPRF-215ENST00000496447 LOXL1Q08397 574 aaPredicted RBP10.16□□□□□ -0.78
PTPRF-215ENST00000496447 DSCR8Q96T75 97 aa10.16□□□□□ -0.78
PTPRF-215ENST00000496447 K7EMT4 169 aa10.16□□□□□ -0.78
PTPRF-215ENST00000496447 Q6ZSR3 168 aa10.16□□□□□ -0.78
PTPRF-215ENST00000496447 IGLV1-47P01700 117 aa10.16□□□□□ -0.78
PTPRF-215ENST00000496447 KIF26AQ9ULI4 1882 aaPredicted RBP10.16□□□□□ -0.78
PTPRF-215ENST00000496447 CRYGCP07315 174 aa10.15□□□□□ -0.78
PTPRF-215ENST00000496447 FXYD2P54710 66 aa10.15□□□□□ -0.78
PTPRF-215ENST00000496447 RBM3P98179 157 aaKnown RBP10.15□□□□□ -0.78
PTPRF-215ENST00000496447 GPHB5Q86YW7 130 aa10.15□□□□□ -0.78
PTPRF-215ENST00000496447 K7EMI3 77 aa10.15□□□□□ -0.78
PTPRF-215ENST00000496447 DAZ2Q13117 558 aaKnown RBP10.15□□□□□ -0.78
PTPRF-215ENST00000496447 DAZ4Q86SG3 579 aaKnown RBP10.15□□□□□ -0.78
PTPRF-215ENST00000496447 LRRC75A-AS1Q8N1F1 130 aa10.15□□□□□ -0.78
PTPRF-215ENST00000496447 DAZ3Q9NR90 486 aaKnown RBP10.15□□□□□ -0.78
PTPRF-215ENST00000496447 Q9H8V8 135 aa10.15□□□□□ -0.78
PTPRF-215ENST00000496447 FAM236AA0A1B0GUQ0 79 aa10.15□□□□□ -0.79
PTPRF-215ENST00000496447 FAM236BA0A1B0GV22 79 aa10.15□□□□□ -0.79
PTPRF-215ENST00000496447 DEFB4AO15263 64 aa10.14□□□□□ -0.79
PTPRF-215ENST00000496447 TIRAPP58753 221 aa10.14□□□□□ -0.79
PTPRF-215ENST00000496447 ZNF503Q96F45 646 aa10.14□□□□□ -0.79
PTPRF-215ENST00000496447 HAMPP81172 84 aa10.14□□□□□ -0.79
PTPRF-215ENST00000496447 C19orf84I3L1E1 186 aa10.14□□□□□ -0.79
PTPRF-215ENST00000496447 LINC00173Q6ZV60 143 aa10.14□□□□□ -0.79
PTPRF-215ENST00000496447 TEX22C9J3V5 150 aa10.14□□□□□ -0.79
PTPRF-215ENST00000496447 SHANK1Q9Y566 2161 aa10.14□□□□□ -0.79
PTPRF-215ENST00000496447 A6NDX4 124 aa10.13□□□□□ -0.79
PTPRF-215ENST00000496447 INSL3P51460 131 aa10.13□□□□□ -0.79
PTPRF-215ENST00000496447 DENND4CQ5VZ89 1909 aa10.13□□□□□ -0.79
PTPRF-215ENST00000496447 GATA1P15976 413 aaPredicted RBP10.13□□□□□ -0.79
PTPRF-215ENST00000496447 Q6ZUT4 128 aa10.13□□□□□ -0.79
PTPRF-215ENST00000496447 DEFB105AQ8NG35 78 aa10.13□□□□□ -0.79
PTPRF-215ENST00000496447 RPL39LQ96EH5 51 aaKnown RBP10.13□□□□□ -0.79
PTPRF-215ENST00000496447 HHLA3Q9XRX5 114 aa10.13□□□□□ -0.79
PTPRF-215ENST00000496447 ETDCA0A1B0GVM5 59 aa10.13□□□□□ -0.79
PTPRF-215ENST00000496447 COX7A2LO14548 114 aa10.13□□□□□ -0.79
PTPRF-215ENST00000496447 WI2-2373I1.2A0A1W2PRP0 233 aa10.13□□□□□ -0.79
PTPRF-215ENST00000496447 PATE2Q6UY27 113 aa10.12□□□□□ -0.79
PTPRF-215ENST00000496447 Q8N1Y9 231 aa10.12□□□□□ -0.79
PTPRF-215ENST00000496447 CHD3Q12873 2000 aaKnown RBP10.12□□□□□ -0.79
PTPRF-215ENST00000496447 TRAV4A0A0B4J268 109 aa10.12□□□□□ -0.79
PTPRF-215ENST00000496447 MSMPQ1L6U9 139 aa10.12□□□□□ -0.79
PTPRF-215ENST00000496447 YPEL4Q96NS1 127 aa10.12□□□□□ -0.79
PTPRF-215ENST00000496447 NOTCH2Q04721 2471 aa10.12□□□□□ -0.79
PTPRF-215ENST00000496447 EML6Q6ZMW3 1958 aa10.11□□□□□ -0.79
PTPRF-215ENST00000496447 A0A0B4J2C4 111 aa10.11□□□□□ -0.79
PTPRF-215ENST00000496447 TNFRSF13BO14836 293 aaPredicted RBP10.11□□□□□ -0.79
PTPRF-215ENST00000496447 NCKAP5O14513 1909 aa10.11□□□□□ -0.79
PTPRF-215ENST00000496447 NDUFV3P56181 108 aaKnown RBP10.11□□□□□ -0.79
PTPRF-215ENST00000496447 TM2D2Q9BX73 214 aa10.1□□□□□ -0.79
PTPRF-215ENST00000496447 PRAC2D3DTV9 90 aa10.1□□□□□ -0.79
PTPRF-215ENST00000496447 SPATA12Q7Z6I5 190 aa10.1□□□□□ -0.79
PTPRF-215ENST00000496447 ADAMTS9Q9P2N4 1935 aa10.1□□□□□ -0.79
PTPRF-215ENST00000496447 ACACBO00763 2458 aa10.1□□□□□ -0.79
PTPRF-215ENST00000496447 ODF3L1Q8IXM7 274 aa10.1□□□□□ -0.79
PTPRF-215ENST00000496447 IGHV4-4A0A075B6R2 117 aa10.1□□□□□ -0.79
PTPRF-215ENST00000496447 LINC01620Q4KN68 170 aa10.1□□□□□ -0.79
PTPRF-215ENST00000496447 WFDC11Q8NEX6 87 aa10.1□□□□□ -0.79
PTPRF-215ENST00000496447 HIVEP2P31629 2446 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 hADV29S1A0JD25 119 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 TMEM61Q8N0U2 210 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 C9orf47Q6ZRZ4 202 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 PRO3102Q9H379 93 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 LMO4P61968 165 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 IGHV4-31P0DP07 118 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 NDUFA11Q86Y39 141 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 IL17DQ8TAD2 202 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 TRBV7-3A0A075B6L6 115 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 TRBV12-3P01733 135 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 SVIPQ8NHG7 77 aa10.09□□□□□ -0.79
PTPRF-215ENST00000496447 MRPL36Q9P0J6 103 aaKnown RBP10.09□□□□□ -0.79
PTPRF-215ENST00000496447 TINCRA0A1B0GVN0 87 aa10.08□□□□□ -0.8
PTPRF-215ENST00000496447 ZFP2Q6ZN57 461 aa10.08□□□□□ -0.8
PTPRF-215ENST00000496447 SPANXB1Q9NS25 103 aaPredicted RBP10.08□□□□□ -0.8
PTPRF-215ENST00000496447 A0A1B0GX51 115 aa10.08□□□□□ -0.8
PTPRF-215ENST00000496447 NDUFS5O43920 106 aa10.08□□□□□ -0.8
PTPRF-215ENST00000496447 INAFM1C9JVW0 142 aa10.08□□□□□ -0.8
PTPRF-215ENST00000496447 CTRLP40313 264 aa10.08□□□□□ -0.8
PTPRF-215ENST00000496447 MSRB1Q9NZV6 116 aa10.08□□□□□ -0.8
PTPRF-215ENST00000496447 CUL9Q8IWT3 2517 aa10.08□□□□□ -0.8
PTPRF-215ENST00000496447 UNQ9165/PRO28630Q6UXU0 137 aa10.08□□□□□ -0.8
PTPRF-215ENST00000496447 C2orf16Q68DN1 1984 aa10.07□□□□□ -0.8
PTPRF-215ENST00000496447 DYSFO75923 2080 aa10.07□□□□□ -0.8
PTPRF-215ENST00000496447 TRAV12-1A0A0B4J245 112 aa10.07□□□□□ -0.8
PTPRF-215ENST00000496447 HIST2H2BCQ6DN03 193 aa10.07□□□□□ -0.8
PTPRF-215ENST00000496447 ZNF843Q8N446 348 aa10.07□□□□□ -0.8
PTPRF-215ENST00000496447 BAALC-AS2P0C853 105 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms